RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LACTBP83111 547 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 COL9A2Q14055 689 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 CCDC85BQ15834 202 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 MRPL50Q8N5N7 158 aaKnown RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 ZDHHC16Q969W1 377 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 FBXL18Q96ME1 805 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 PHOX2BQ99453 314 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 SLC4A5Q9BY07 1137 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 RTFDC1Q9BY42 306 aaPredicted RBP5.36□□□□□ -1.55
LIG3-211ENST00000588713 SLC52A2Q9HAB3 445 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 KCNQ5Q9NR82 932 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 ZNF652Q9Y2D9 606 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 ATP6V0A2Q9Y487 856 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 FAM205AQ6ZU69 1335 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 MYPNQ86TC9 1320 aa5.36□□□□□ -1.55
LIG3-211ENST00000588713 RTL9Q8NET4 1388 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 FYB1O15117 783 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 HOXA10P31260 410 aaPredicted RBP5.35□□□□□ -1.55
LIG3-211ENST00000588713 GJA5P36382 358 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 GRIN2CQ14957 1233 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 LDLRAD1Q5T700 205 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 VSIG10Q8N0Z9 540 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 WNT2BQ93097 391 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 DDX27Q96GQ7 796 aaKnown RBP5.35□□□□□ -1.55
LIG3-211ENST00000588713 LBHD1Q9BQE6 289 aaPredicted RBP5.35□□□□□ -1.55
LIG3-211ENST00000588713 SRRDQ9UH36 339 aa5.35□□□□□ -1.55
LIG3-211ENST00000588713 SALL2Q9Y467 1007 aaPredicted RBP5.35□□□□□ -1.55
LIG3-211ENST00000588713 SSC5DA1L4H1 1573 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 BHMG1C9JSJ3 638 aaPredicted RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 GTPBP6O43824 516 aaPredicted RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 ECE2O60344 883 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 FMNL1O95466 1100 aaPredicted RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 GNRH1P01148 92 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 OSBPP22059 807 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 PSMC4P43686 418 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 RRP1P56182 461 aaKnown RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 AMOTQ4VCS5 1084 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 CCDC184Q52MB2 194 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 THSD4Q6ZMP0 1018 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 PODNQ7Z5L7 613 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 FAM9BQ8IZU0 186 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 TTC5Q8N0Z6 440 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 ZBTB38Q8NAP3 1195 aaPredicted RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 ZNF496Q96IT1 587 aaPredicted RBP5.34□□□□□ -1.55
LIG3-211ENST00000588713 CRAMP1Q96RY5 1269 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 ZBED2Q9BTP6 218 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 ADAM33Q9BZ11 813 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 NBPF3Q9H094 633 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 MYOZ2Q9NPC6 264 aa5.34□□□□□ -1.55
LIG3-211ENST00000588713 NBPF26B4DH59 902 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 INHAP05111 366 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 HOXD10P28358 340 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 CTGFP29279 349 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 KCNQ1P51787 676 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 TFF2Q03403 129 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 PRKCZQ05513 592 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 PDE3AQ14432 1141 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 WASHC4Q2M389 1173 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 NBPF9Q3BBW0 867 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 CLEC4GQ6UXB4 293 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 C11orf49Q9H6J7 331 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 LGR6Q9HBX8 967 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 BAHCC1Q9P281 2608 aa5.33□□□□□ -1.56
LIG3-211ENST00000588713 ABCC4O15439 1325 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 CCL15-CCL14A0A0B4J2E2 113 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 SLC24A1O60721 1099 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 WDHD1O75717 1129 aaPredicted RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 NEFMP07197 916 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 BMP1P13497 986 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 ELNP15502 786 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 ITGB8P26012 769 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 ZNF280AP59817 542 aaPredicted RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 SMAD3P84022 425 aaKnown RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 EIF4A2Q14240 407 aaKnown RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 SHHQ15465 462 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 CCL15Q16663 113 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 C9orf50Q5SZB4 431 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 FAM43AQ8N2R8 423 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 BRI3BPQ8WY22 251 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 GAS2L1Q99501 681 aaPredicted RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 NYXQ9GZU5 481 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 TCF20Q9UGU0 1960 aaKnown RBP5.32□□□□□ -1.56
LIG3-211ENST00000588713 TAF1P21675 1872 aa5.32□□□□□ -1.56
LIG3-211ENST00000588713 MYBBP1AQ9BQG0 1328 aaKnown RBP5.31□□□□□ -1.56
LIG3-211ENST00000588713 TESPA1A2RU30 521 aaPredicted RBP5.31□□□□□ -1.56
LIG3-211ENST00000588713 PRR33A8MZF0 331 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 C6orf229H3BNL8 230 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 TLR2O60603 784 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 SASH1O94885 1247 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 VIL1P09327 827 aaKnown RBP5.31□□□□□ -1.56
LIG3-211ENST00000588713 USP17L8P0C7I0 530 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 IGFBP4P22692 258 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 HLFQ16534 295 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 CSPP1Q1MSJ5 1256 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 ERMP1Q7Z2K6 904 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 AEBP1Q8IUX7 1158 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 SP8Q8IXZ3 490 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 MICALL1Q8N3F8 863 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 L3MBTL2Q969R5 705 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 OPTNQ96CV9 577 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms