RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 RAI14Q9P0K7 980 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 G3V3G9 751 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 EIF5BO60841 1220 aaKnown RBP13.61□□□□□ -0.23
VMP1-207ENST00000588131 PTH1RQ03431 593 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 DCAF8Q5TAQ9 597 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 ERICH6Q7L0X2 663 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 SYT17Q9BSW7 474 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 KCNQ5Q9NR82 932 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 CCDC88AQ3V6T2 1871 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 CCDC171Q6TFL3 1326 aa13.61□□□□□ -0.23
VMP1-207ENST00000588131 MECOMQ03112 1051 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 PODNQ7Z5L7 613 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 ADGRA1Q86SQ6 560 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 ZGPATQ8N5A5 531 aaKnown RBP13.6□□□□□ -0.23
VMP1-207ENST00000588131 FBXW7Q969H0 707 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 NSUN4Q96CB9 384 aaKnown RBP13.6□□□□□ -0.23
VMP1-207ENST00000588131 MXD3Q9BW11 206 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 TAOK3Q9H2K8 898 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 PSME4Q14997 1843 aa13.6□□□□□ -0.23
VMP1-207ENST00000588131 YDJCA8MPS7 323 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 LDHBP07195 334 aaKnown RBP13.59□□□□□ -0.23
VMP1-207ENST00000588131 CYP7A1P22680 504 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 DSG3P32926 999 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 IARSP41252 1262 aaKnown RBP13.59□□□□□ -0.23
VMP1-207ENST00000588131 RBM25P49756 843 aaKnown RBP13.59□□□□□ -0.23
VMP1-207ENST00000588131 RASSF7Q02833 373 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 MFSD14BQ5SR56 506 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 VPS53Q5VIR6 699 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 SPTY2D1Q68D10 685 aaPredicted RBP13.59□□□□□ -0.23
VMP1-207ENST00000588131 KIAA1211Q6ZU35 1233 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 LARGE2Q8N3Y3 721 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 CERS5Q8N5B7 392 aa13.59□□□□□ -0.23
VMP1-207ENST00000588131 GPAA1O43292 621 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 PRELPP51888 382 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 TTLL5Q6EMB2 1281 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 NAA16Q6N069 864 aaPredicted RBP13.58□□□□□ -0.24
VMP1-207ENST00000588131 SAMD1Q6SPF0 538 aaPredicted RBP13.58□□□□□ -0.24
VMP1-207ENST00000588131 MIGA1Q8NAN2 632 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 TBC1D22AQ8WUA7 517 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 VPS33BQ9H267 617 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 LTBP3Q9NS15 1303 aa13.58□□□□□ -0.24
VMP1-207ENST00000588131 FOXP2O15409 715 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 EPB41L2O43491 1005 aaKnown RBP13.57□□□□□ -0.24
VMP1-207ENST00000588131 MBD4O95243 580 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
VMP1-207ENST00000588131 DACT2Q5SW24 774 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 DZIP1Q86YF9 867 aaKnown RBP13.57□□□□□ -0.24
VMP1-207ENST00000588131 LCORLQ8N3X6 602 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 MAP4K1Q92918 833 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 ARMT1Q9H993 441 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 PALD1Q9ULE6 856 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 RBM8AQ9Y5S9 174 aaKnown RBP13.57□□□□□ -0.24
VMP1-207ENST00000588131 ADAMTSL1Q8N6G6 1762 aa13.57□□□□□ -0.24
VMP1-207ENST00000588131 USP17L3A6NCW0 530 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 USP17L4A6NCW7 530 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 HSPD1P10809 573 aaKnown RBP13.56□□□□□ -0.24
VMP1-207ENST00000588131 HSPA4P34932 840 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 DYNLL1P63167 89 aaKnown RBP13.56□□□□□ -0.24
VMP1-207ENST00000588131 DIXDC1Q155Q3 683 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 STRIP1Q5VSL9 837 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 USP17L1Q7RTZ2 530 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 NIM1KQ8IY84 436 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 AIDAQ96BJ3 306 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 STRBPQ96SI9 672 aaKnown RBP13.56□□□□□ -0.24
VMP1-207ENST00000588131 KIF2CQ99661 725 aa13.56□□□□□ -0.24
VMP1-207ENST00000588131 RIOK1Q9BRS2 568 aaKnown RBP13.56□□□□□ -0.24
VMP1-207ENST00000588131 MYH2Q9UKX2 1941 aa13.55□□□□□ -0.24
VMP1-207ENST00000588131 MAGEB6P1A0A0J9YX57 407 aa13.55□□□□□ -0.24
VMP1-207ENST00000588131 F8W031 263 aaPredicted RBP13.55□□□□□ -0.24
VMP1-207ENST00000588131 IGSF3O75054 1194 aa13.55□□□□□ -0.24
VMP1-207ENST00000588131 FKBP1AP62942 108 aaKnown RBP13.55□□□□□ -0.24
VMP1-207ENST00000588131 DSCC1Q9BVC3 393 aa13.55□□□□□ -0.24
VMP1-207ENST00000588131 PRKAB2O43741 272 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 YBX3P16989 372 aaKnown RBP eCLIP13.54□□□□□ -0.24
VMP1-207ENST00000588131 GSTO1P78417 241 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 NECTIN1Q15223 517 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 ARHGAP27Q6ZUM4 889 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 AATFQ9NY61 560 aaKnown RBP eCLIP13.54□□□□□ -0.24
VMP1-207ENST00000588131 ZNRF3Q9ULT6 936 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 SUGT1Q9Y2Z0 365 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 MROH7-TTC4A0A0A0MT08 1334 aa13.54□□□□□ -0.24
VMP1-207ENST00000588131 SLC27A2O14975 620 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 RAD17O75943 681 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 MCCP23508 829 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 CREB3L3Q68CJ9 461 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 TMED8Q6PL24 325 aaPredicted RBP13.53□□□□□ -0.24
VMP1-207ENST00000588131 RASEFQ8IZ41 740 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 EPB41L4AQ9HCS5 686 aaPredicted RBP13.53□□□□□ -0.24
VMP1-207ENST00000588131 FOXD4L1Q9NU39 408 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 TTF2Q9UNY4 1162 aaKnown RBP13.53□□□□□ -0.24
VMP1-207ENST00000588131 SNX14Q9Y5W7 946 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 GAKO14976 1311 aa13.53□□□□□ -0.24
VMP1-207ENST00000588131 PSMD14O00487 310 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 LDHCP07864 332 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 SCNN1DP51172 638 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 RSBN1LQ6PCB5 846 aaPredicted RBP13.52□□□□□ -0.25
VMP1-207ENST00000588131 KIAA0825Q8IV33 1275 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 JDP2Q8WYK2 163 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 KCNB2Q92953 911 aa13.52□□□□□ -0.25
VMP1-207ENST00000588131 TAF6LQ9Y6J9 622 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms