RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 R3HDMLQ9H3Y0 253 aa17.94■□□□□ 0.46
VMP1-206ENST00000587945 TBC1D22AQ8WUA7 517 aa17.93■□□□□ 0.46
VMP1-206ENST00000587945 ZNF296Q8WUU4 475 aaPredicted RBP17.93■□□□□ 0.46
VMP1-206ENST00000587945 LRRFIP2Q9Y608 721 aaKnown RBP17.93■□□□□ 0.46
VMP1-206ENST00000587945 SLC5A1P13866 664 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 TNFAIP1Q13829 316 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 CTU1Q7Z7A3 348 aaKnown RBP17.92■□□□□ 0.46
VMP1-206ENST00000587945 LPIN2Q92539 896 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 WNK4Q96J92 1243 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 TEPSINQ96N21 525 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 MEIS3Q99687 375 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 TMEM39BQ9GZU3 492 aa17.92■□□□□ 0.46
VMP1-206ENST00000587945 PA2G4Q9UQ80 394 aaKnown RBP17.92■□□□□ 0.46
VMP1-206ENST00000587945 GJA5P36382 358 aa17.91■□□□□ 0.46
VMP1-206ENST00000587945 IREB2P48200 963 aaKnown RBP17.91■□□□□ 0.46
VMP1-206ENST00000587945 CACNB3P54284 484 aa17.91■□□□□ 0.46
VMP1-206ENST00000587945 GPR25O00155 361 aa17.9■□□□□ 0.46
VMP1-206ENST00000587945 HDLBPQ00341 1268 aaKnown RBP17.9■□□□□ 0.46
VMP1-206ENST00000587945 TEKT1Q969V4 418 aa17.9■□□□□ 0.46
VMP1-206ENST00000587945 KIF16BQ96L93 1317 aa17.9■□□□□ 0.46
VMP1-206ENST00000587945 MANSC4A6NHS7 340 aaPredicted RBP17.89■□□□□ 0.45
VMP1-206ENST00000587945 CIAO1O76071 339 aa17.89■□□□□ 0.45
VMP1-206ENST00000587945 ZBTB48P10074 688 aaPredicted RBP17.89■□□□□ 0.45
VMP1-206ENST00000587945 RGS19P49795 217 aa17.89■□□□□ 0.45
VMP1-206ENST00000587945 APOBEC3HQ6NTF7 200 aaKnown RBP17.89■□□□□ 0.45
VMP1-206ENST00000587945 ELP3Q9H9T3 547 aa17.89■□□□□ 0.45
VMP1-206ENST00000587945 CEP126Q9P2H0 1117 aa17.89■□□□□ 0.45
VMP1-206ENST00000587945 IGF2BP3O00425 579 aaKnown RBP eCLIP17.88■□□□□ 0.45
VMP1-206ENST00000587945 TNNI2P48788 182 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 ATP2B3Q16720 1220 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 IFNL1Q8IU54 200 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 ANKRD13AQ8IZ07 590 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 ZDHHC15Q96MV8 337 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 TNNQ9UQP3 1299 aa17.88■□□□□ 0.45
VMP1-206ENST00000587945 UNCXA6NJT0 531 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 MLLT1Q03111 559 aaPredicted RBP17.87■□□□□ 0.45
VMP1-206ENST00000587945 INTS3Q68E01 1043 aaKnown RBP17.87■□□□□ 0.45
VMP1-206ENST00000587945 WDR66Q8TBY9 1149 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 CNKSR2Q8WXI2 1034 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 MRIQ9BWK5 157 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 FBXO3Q9UK99 471 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 SUGT1Q9Y2Z0 365 aa17.87■□□□□ 0.45
VMP1-206ENST00000587945 BCAR3O75815 825 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 IL15P40933 162 aaPredicted RBP17.86■□□□□ 0.45
VMP1-206ENST00000587945 INHBEP58166 350 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.86■□□□□ 0.45
VMP1-206ENST00000587945 ARHGAP45Q92619 1136 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 OPTNQ96CV9 577 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 CFHR5Q9BXR6 569 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 HDAC5Q9UQL6 1122 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 AKAP11Q9UKA4 1901 aa17.86■□□□□ 0.45
VMP1-206ENST00000587945 MAST3O60307 1309 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 FKTNO75072 461 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 ALDH1A1P00352 501 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 ADORA1P30542 326 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 PHKA1P46020 1223 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 SOX10P56693 466 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 MAP3K9P80192 1104 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 NOM1Q5C9Z4 860 aaKnown RBP17.85■□□□□ 0.45
VMP1-206ENST00000587945 HHIPL2Q6UWX4 724 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 FRAT1Q92837 279 aaPredicted RBP17.85■□□□□ 0.45
VMP1-206ENST00000587945 COPRSQ9NQ92 184 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 TMOD2Q9NZR1 351 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 HPS5Q9UPZ3 1129 aa17.85■□□□□ 0.45
VMP1-206ENST00000587945 TRIM27P14373 513 aa17.84■□□□□ 0.45
VMP1-206ENST00000587945 PRDX5P30044 214 aa17.84■□□□□ 0.45
VMP1-206ENST00000587945 VGLL4Q14135 290 aa17.84■□□□□ 0.45
VMP1-206ENST00000587945 DIXDC1Q155Q3 683 aa17.84■□□□□ 0.45
VMP1-206ENST00000587945 PTPN18Q99952 460 aa17.84■□□□□ 0.45
VMP1-206ENST00000587945 GNL3LQ9NVN8 582 aaKnown RBP17.84■□□□□ 0.45
VMP1-206ENST00000587945 SRGAP3O43295 1099 aa17.83■□□□□ 0.44
VMP1-206ENST00000587945 GNAI3P08754 354 aa17.83■□□□□ 0.44
VMP1-206ENST00000587945 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.83■□□□□ 0.44
VMP1-206ENST00000587945 CLUAP1Q96AJ1 413 aa17.83■□□□□ 0.44
VMP1-206ENST00000587945 DAGLAQ9Y4D2 1042 aa17.83■□□□□ 0.44
VMP1-206ENST00000587945 TESPA1A2RU30 521 aaPredicted RBP17.82■□□□□ 0.44
VMP1-206ENST00000587945 IPO8O15397 1037 aaKnown RBP17.82■□□□□ 0.44
VMP1-206ENST00000587945 TIMM10P62072 90 aa17.82■□□□□ 0.44
VMP1-206ENST00000587945 PKN2Q16513 984 aaKnown RBP17.82■□□□□ 0.44
VMP1-206ENST00000587945 FAM83AQ86UY5 434 aa17.82■□□□□ 0.44
VMP1-206ENST00000587945 MIER1Q8N108 512 aa17.82■□□□□ 0.44
VMP1-206ENST00000587945 MS4A4AQ96JQ5 239 aa17.82■□□□□ 0.44
VMP1-206ENST00000587945 CSADQ9Y600 493 aa17.82■□□□□ 0.44
VMP1-206ENST00000587945 LDHBP07195 334 aaKnown RBP17.81■□□□□ 0.44
VMP1-206ENST00000587945 TFCP2Q12800 502 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 CRHR2Q13324 411 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 FKBP1CQ5VVH2 108 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 CCDC102BQ68D86 513 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 CDC42EP5Q6NZY7 148 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 ATF7IPQ6VMQ6 1270 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 BRI3BPQ8WY22 251 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 OTUD5Q96G74 571 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 WRNIP1Q96S55 665 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 DENND2AQ9ULE3 1009 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.81■□□□□ 0.44
VMP1-206ENST00000587945 ECM29Q5VYK3 1845 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 ARAP2Q8WZ64 1704 aa17.81■□□□□ 0.44
VMP1-206ENST00000587945 TCP10Q12799 353 aa17.8■□□□□ 0.44
VMP1-206ENST00000587945 NFIAQ12857 509 aa17.8■□□□□ 0.44
VMP1-206ENST00000587945 OTUD7BQ6GQQ9 843 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms