RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 TMED8Q6PL24 325 aaPredicted RBP7.41□□□□□ -1.22
LIG3-206ENST00000586058 C2CD5Q86YS7 1000 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 APPBP2Q92624 585 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 AIDAQ96BJ3 306 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 USP26Q9BXU7 913 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 OCEL1Q9H607 264 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 SNRKQ9NRH2 765 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 HMG20BQ9P0W2 317 aa7.41□□□□□ -1.22
LIG3-206ENST00000586058 NSFL1CQ9UNZ2 370 aaKnown RBP7.41□□□□□ -1.22
LIG3-206ENST00000586058 A0A0D9SFI3 127 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 C6orf229H3BNL8 230 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 SRGNP10124 158 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 PSMA5P28066 241 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 MCM2P49736 904 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 RASGRF1Q13972 1273 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 CC2D2BQ6DHV5 1058 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 DPP8Q6V1X1 898 aaPredicted RBP7.4□□□□□ -1.22
LIG3-206ENST00000586058 DZIP1Q86YF9 867 aaKnown RBP7.4□□□□□ -1.22
LIG3-206ENST00000586058 SLF2Q8IX21 1173 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 SP8Q8IXZ3 490 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 SUPT20HQ8NEM7 779 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 RAI14Q9P0K7 980 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 ABCF2Q9UG63 623 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 CTNNA3Q9UI47 895 aa7.4□□□□□ -1.22
LIG3-206ENST00000586058 ZNF646O15015 1829 aaPredicted RBP7.4□□□□□ -1.23
LIG3-206ENST00000586058 DICER1Q9UPY3 1922 aaKnown RBP7.4□□□□□ -1.23
LIG3-206ENST00000586058 MYH15Q9Y2K3 1946 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 MAST3O60307 1309 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 KLRG2A4D1S0 409 aaPredicted RBP7.39□□□□□ -1.23
LIG3-206ENST00000586058 GNAT2P19087 354 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 GYG1P46976 350 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 BCAMP50895 628 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 GSTO1P78417 241 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 UBE3CQ15386 1083 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 IMMTQ16891 758 aaKnown RBP7.39□□□□□ -1.23
LIG3-206ENST00000586058 ZMYM1Q5SVZ6 1142 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 SLC9C2Q5TAH2 1124 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 SOGA3Q5TF21 947 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 ZNF467Q7Z7K2 595 aaPredicted RBP7.39□□□□□ -1.23
LIG3-206ENST00000586058 CERS3Q8IU89 383 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 AMOTL1Q8IY63 956 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 MPNDQ8N594 471 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 WDR66Q8TBY9 1149 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 TBC1D22AQ8WUA7 517 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 EDC3Q96F86 508 aaKnown RBP7.39□□□□□ -1.23
LIG3-206ENST00000586058 FAM227BQ96M60 508 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 DSCC1Q9BVC3 393 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 NACAP1Q9BZK3 213 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 MTFR1LQ9H019 292 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 TAOK2Q9UL54 1235 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 ATP6V0A2Q9Y487 856 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 NDUFB9Q9Y6M9 179 aa7.39□□□□□ -1.23
LIG3-206ENST00000586058 ZNF532Q9HCE3 1301 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 APPP05067 770 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 CYP2E1P05181 493 aaPredicted RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 CHRM1P11229 460 aaPredicted RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 PDE6AP16499 860 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 HSPA4P34932 840 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 ADD2P35612 726 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 FGD1P98174 961 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 CHAF1AQ13111 956 aaPredicted RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 SCARF1Q14162 830 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 C15orf52Q6ZUT6 534 aaKnown RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 MAGEB6Q8N7X4 407 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 FBXW7Q969H0 707 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 ZC3H12CQ9C0D7 883 aaKnown RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 LSG1Q9H089 658 aaKnown RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 ANTXR1Q9H6X2 564 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 PODXL2Q9NZ53 605 aa7.38□□□□□ -1.23
LIG3-206ENST00000586058 IQSEC3Q9UPP2 1182 aaPredicted RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 RBM8AQ9Y5S9 174 aaKnown RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 DDX60LQ5H9U9 1706 aaKnown RBP7.38□□□□□ -1.23
LIG3-206ENST00000586058 RPAP1Q9BWH6 1393 aaPredicted RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 K7ELQ4 463 aaPredicted RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 GPAA1O43292 621 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 LDHBP07195 334 aaKnown RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 LDHCP07864 332 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 HMGB1P09429 215 aaKnown RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 NEK4P51957 841 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 GPSM2P81274 684 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 TRDNQ13061 729 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 ANKRD1Q15327 319 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 NAA16Q6N069 864 aaPredicted RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 PRPF40BQ6NWY9 871 aaKnown RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 PI16Q6UXB8 463 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 RALYLQ86SE5 291 aaKnown RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 HOMEZQ8IX15 550 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 PDCD7Q8N8D1 485 aaKnown RBP7.37□□□□□ -1.23
LIG3-206ENST00000586058 SNX21Q969T3 373 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 COA1Q9GZY4 146 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 NAPBQ9H115 298 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 CYP46A1Q9Y6A2 500 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 ADAMTSL1Q8N6G6 1762 aa7.37□□□□□ -1.23
LIG3-206ENST00000586058 COL1A1P02452 1464 aaPredicted RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 ZMYM6O95789 1325 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 SALL1Q9NSC2 1324 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 MAGEB6P1A0A0J9YX57 407 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 TULP1O00294 542 aaPredicted RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 BAG3O95817 575 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 CASTP20810 708 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms