RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 TPRNQ4KMQ1 711 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 CC2D2BQ6DHV5 1058 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 FBXO33Q7Z6M2 555 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 TTLL6Q8N841 843 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 ZNF454Q8N9F8 522 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 HAUS7Q99871 368 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 FER1L6Q2WGJ9 1857 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 MED23Q9ULK4 1368 aa12.03□□□□□ -0.48
SMCHD1-212ENST00000585229 SOCS7O14512 581 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 UQCRFS1P1P0C7P4 283 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 SDSP20132 328 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 C8orf34Q49A92 452 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 GRIPAP1Q4V328 841 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 CCDC158Q5M9N0 1113 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 CCDC102BQ68D86 513 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 TICAM2Q86XR7 235 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 RTFDC1Q9BY42 306 aaPredicted RBP12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 GGA1Q9UJY5 639 aa12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 PDS5AQ29RF7 1337 aaKnown RBP12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 ZNF646O15015 1829 aaPredicted RBP12.02□□□□□ -0.49
SMCHD1-212ENST00000585229 A0A0G2JLW4 131 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 WTIPA6NIX2 430 aaPredicted RBP12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 PHKA1P46020 1223 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 POTEEQ6S8J3 1075 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 TBC1D16Q8TBP0 767 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 ANKIB1Q9P2G1 1089 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 POLLQ9UGP5 575 aa12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 MYO5AQ9Y4I1 1855 aaKnown RBP12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 COL1A1P02452 1464 aaPredicted RBP12.01□□□□□ -0.49
SMCHD1-212ENST00000585229 MAST2Q6P0Q8 1798 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 PSME4Q14997 1843 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 GRXCR2A6NFK2 248 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 UFL1O94874 794 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 KLRK1P26718 216 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 MCAMP43121 646 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 KCNJ4P48050 445 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 TTC39AQ5SRH9 613 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 GORABQ5T7V8 394 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 CNTROBQ8N137 903 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 MPNDQ8N594 471 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 EVI5LQ96CN4 794 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 FAM84BQ96KN1 310 aaPredicted RBP12□□□□□ -0.49
SMCHD1-212ENST00000585229 BCL11AQ9H165 835 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 BOLA2Q9H3K6 86 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 PIM2Q9P1W9 311 aa12□□□□□ -0.49
SMCHD1-212ENST00000585229 NSFL1CQ9UNZ2 370 aaKnown RBP12□□□□□ -0.49
SMCHD1-212ENST00000585229 CHD4Q14839 1912 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 OSBPP22059 807 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 BCAMP50895 628 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 SCARF1Q14162 830 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 CCDC93Q567U6 631 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 CAVIN4Q5BKX8 364 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 SOGA3Q5TF21 947 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 DPP8Q6V1X1 898 aaPredicted RBP11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 TXNRD3Q86VQ6 643 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 BACH2Q9BYV9 841 aa11.99□□□□□ -0.49
SMCHD1-212ENST00000585229 CDC45O75419 566 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 IL1R1P14778 569 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 HIBADHP31937 336 aaKnown RBP11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 GYG1P46976 350 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 RASGRF1Q13972 1273 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 OLFM4Q6UX06 510 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 PSMD1Q99460 953 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 ADAM33Q9BZ11 813 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 TMX4Q9H1E5 349 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 GNL3LQ9NVN8 582 aaKnown RBP11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 PAG1Q9NWQ8 432 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 HMG20BQ9P0W2 317 aa11.98□□□□□ -0.49
SMCHD1-212ENST00000585229 TRIM6-TRIM34B2RNG4 842 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 IGSF3O75054 1194 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 DALRD3Q5D0E6 543 aaKnown RBP11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 PPP4R3BQ5MIZ7 849 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 ZNF804AQ7Z570 1209 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 RTKN2Q8IZC4 609 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 KBTBD3Q8NAB2 608 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 SUPT20HQ8NEM7 779 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 TDRD7Q8NHU6 1098 aaKnown RBP11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 EYA3Q99504 573 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 DENND2AQ9ULE3 1009 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 CCDC88AQ3V6T2 1871 aa11.97□□□□□ -0.49
SMCHD1-212ENST00000585229 C21orf2O43822 256 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 MAP4K4O95819 1239 aaPredicted RBP11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 CYP2E1P05181 493 aaPredicted RBP11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 CHMLP26374 656 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 ZAP70P43403 619 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 TBC1D9Q6ZT07 1266 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 ZNF687Q8N1G0 1237 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 SPATA5Q8NB90 893 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 NLGN2Q8NFZ4 835 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 ZDHHC16Q969W1 377 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 RILPL2Q969X0 211 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 EDC3Q96F86 508 aaKnown RBP11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 VPS33BQ9H267 617 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 NDUFB9Q9Y6M9 179 aa11.96□□□□□ -0.49
SMCHD1-212ENST00000585229 SCN9AQ15858 1988 aa11.96□□□□□ -0.5
SMCHD1-212ENST00000585229 LTBP3Q9NS15 1303 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 SALL1Q9NSC2 1324 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 C6orf229H3BNL8 230 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 HIP1O00291 1037 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms