RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	TSR2	Q969E8	191 aa	Known RBP	11.15	□□□□□ -0.62
NUP85-223	ENST00000583877	PRMT6	Q96LA8	375 aa	Predicted RBP	11.15	□□□□□ -0.62
NUP85-223	ENST00000583877	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.15	□□□□□ -0.62
NUP85-223	ENST00000583877	PCDHAC2	Q9Y5I4	1007 aa		11.15	□□□□□ -0.62
NUP85-223	ENST00000583877	CLRN2	A0PK11	232 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877		F8W031	263 aa	Predicted RBP	11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	SNAP23	O00161	211 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	TAF5L	O75529	589 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	CHRM1	P11229	460 aa	Predicted RBP	11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	TWISTNB	Q3B726	338 aa	Predicted RBP	11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	LINS1	Q8NG48	757 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	PTPN18	Q99952	460 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	VEZT	Q9HBM0	779 aa		11.14	□□□□□ -0.63
NUP85-223	ENST00000583877	EN2	P19622	333 aa	Predicted RBP	11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	FLII	Q13045	1269 aa		11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	IFIT5	Q13325	482 aa	Known RBP	11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	TNFAIP1	Q13829	316 aa		11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	RASA3	Q14644	834 aa		11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	HELB	Q8NG08	1087 aa	Predicted RBP	11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	DNAAF4	Q8WXU2	420 aa		11.13	□□□□□ -0.63
NUP85-223	ENST00000583877	AOX1	Q06278	1338 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	RBM5	P52756	815 aa	Known RBP eCLIP	11.12	□□□□□ -0.63	8e-6	■■■■□ 20.7
NUP85-223	ENST00000583877	FOXO4	P98177	505 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	CAP1	Q01518	475 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	FKBP5	Q13451	457 aa	Predicted RBP	11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	ARHGEF6	Q15052	776 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	CCDC27	Q2M243	656 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	NBPF11	Q86T75	865 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	OPTN	Q96CV9	577 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	ZNF333	Q96JL9	665 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	MS4A4A	Q96JQ5	239 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	TMEM106C	Q9BVX2	250 aa		11.12	□□□□□ -0.63
NUP85-223	ENST00000583877	FAM205A	Q6ZU69	1335 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	COL6A3	P12111	3177 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	FXR1	P51114	621 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	ELP3	Q9H9T3	547 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	SERPINA10	Q9UK55	444 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	JAG2	Q9Y219	1238 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877		A0A0C4DFX4	3053 aa		11.11	□□□□□ -0.63
NUP85-223	ENST00000583877	DOCK3	Q8IZD9	2030 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	GTF2A2	P52657	109 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	SLC9C1	Q4G0N8	1177 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	WWC1	Q8IX03	1113 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	TEPSIN	Q96N21	525 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	ZFYVE28	Q9HCC9	887 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	ZNF70	Q9UC06	446 aa	Predicted RBP	11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	CHMP3	Q9Y3E7	222 aa		11.1	□□□□□ -0.63
NUP85-223	ENST00000583877	IL16	Q14005	1332 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	CCL15-CCL14	A0A0B4J2E2	113 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	VGLL4	Q14135	290 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	TAF1C	Q15572	869 aa	Predicted RBP	11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	CCL15	Q16663	113 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	CCDC57	Q2TAC2	916 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	MFSD14B	Q5SR56	506 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	LDHAL6A	Q6ZMR3	332 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	TDRD7	Q8NHU6	1098 aa	Known RBP	11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	BRI3BP	Q8WY22	251 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	TDRD3	Q9H7E2	651 aa	Known RBP	11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	TTF2	Q9UNY4	1162 aa	Known RBP	11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	PTCH2	Q9Y6C5	1203 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	PTPRF	P10586	1907 aa		11.09	□□□□□ -0.63
NUP85-223	ENST00000583877	LAMA3	Q16787	3333 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	PLIN1	O60240	522 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	WDHD1	O75717	1129 aa	Predicted RBP	11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	TNNI2	P48788	182 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	MAP3K9	P80192	1104 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	UBE4A	Q14139	1066 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	SLC4A8	Q2Y0W8	1093 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	TAF7L	Q5H9L4	462 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	LMBR1L	Q6UX01	489 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	DZIP1L	Q8IYY4	767 aa	Known RBP	11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	FAM43A	Q8N2R8	423 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	ZNF594	Q96JF6	807 aa	Predicted RBP	11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	CNNM1	Q9NRU3	951 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	COLQ	Q9Y215	455 aa	Predicted RBP	11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	CSAD	Q9Y600	493 aa		11.08	□□□□□ -0.64
NUP85-223	ENST00000583877	TCP10L2	B9ZVM9	353 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	GNRH1	P01148	92 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	HIBADH	P31937	336 aa	Known RBP	11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	CRK	P46108	304 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	BEND3	Q5T5X7	828 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	CDAN1	Q8IWY9	1227 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	OTUD5	Q96G74	571 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	TMEM39B	Q9GZU3	492 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	ZCCHC17	Q9NP64	241 aa	Known RBP	11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	MYH2	Q9UKX2	1941 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	DOCK2	Q92608	1830 aa		11.07	□□□□□ -0.64
NUP85-223	ENST00000583877	SPDYE5	A6NIY4	337 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	GRM8	O00222	908 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	STK25	O00506	426 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	TLR2	O60603	784 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	VAMP4	O75379	141 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	CETP	P11597	493 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	GYG1	P46976	350 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	HDLBP	Q00341	1268 aa	Known RBP	11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	KIF22	Q14807	665 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	EPHA10	Q5JZY3	1008 aa		11.06	□□□□□ -0.64
NUP85-223	ENST00000583877	FAM84B	Q96KN1	310 aa	Predicted RBP	11.06	□□□□□ -0.64

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