RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 HOXA5P20719 270 aa7.34□□□□□ -1.23
SMCHD1-209ENST00000583441 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 MCM6Q14566 821 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 SLC23A3Q6PIS1 610 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 MPZL3Q6UWV2 235 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 DYMQ7RTS9 669 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 C20orf173Q96LM9 149 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 KANSL3Q9P2N6 904 aa7.33□□□□□ -1.24
SMCHD1-209ENST00000583441 NFKBIEO00221 500 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 PTK7Q13308 1070 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 AOC3Q16853 763 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 ANGEL2Q5VTE6 544 aaKnown RBP7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 PRR23BQ6ZRT6 265 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 ANKMY2Q8IV38 441 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 C1GALT1Q9NS00 363 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 DZANK1Q9NVP4 752 aa7.32□□□□□ -1.24
SMCHD1-209ENST00000583441 POM121CA8CG34 1229 aa7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 ACPPP15309 386 aa7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 CIAPIN1Q6FI81 312 aa7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 FAM181AQ8N9Y4 354 aa7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 SOX17Q9H6I2 414 aaPredicted RBP7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 ACSS3Q9H6R3 686 aa7.31□□□□□ -1.24
SMCHD1-209ENST00000583441 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 PSPNO60542 156 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 TRPA1O75762 1119 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 KRT1P04264 644 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 SEZ6L2Q6UXD5 910 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 BSNDQ8WZ55 320 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 HRASLS5Q96KN8 279 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 LGR6Q9HBX8 967 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 SALL4Q9UJQ4 1053 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 DAGLAQ9Y4D2 1042 aa7.3□□□□□ -1.24
SMCHD1-209ENST00000583441 TMEM253P0C7T8 217 aa7.29□□□□□ -1.24
SMCHD1-209ENST00000583441 ASPAP45381 313 aa7.29□□□□□ -1.24
SMCHD1-209ENST00000583441 GSTM4Q03013 218 aa7.29□□□□□ -1.24
SMCHD1-209ENST00000583441 HHIPQ96QV1 700 aa7.29□□□□□ -1.24
SMCHD1-209ENST00000583441 FAM105AQ9NUU6 356 aa7.29□□□□□ -1.24
SMCHD1-209ENST00000583441 DYNC1LI2O43237 492 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 KCNA10Q16322 511 aa7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 IFI16Q16666 785 aaKnown RBP7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 ARHGAP27Q6ZUM4 889 aa7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 VN1R5Q7Z5H4 357 aa7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 FBXO15Q8NCQ5 510 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 GPR152Q8TDT2 470 aa7.28□□□□□ -1.24
SMCHD1-209ENST00000583441 EIF4EBP3O60516 100 aaPredicted RBP7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 GLI1P08151 1106 aa7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 AFMP43652 599 aa7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 AKAP4Q5JQC9 854 aa7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 TMEM102Q8N9M5 508 aaPredicted RBP7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 ELP3Q9H9T3 547 aa7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 PRDM7Q9NQW5 492 aa7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 TFIP11Q9UBB9 837 aaKnown RBP7.27□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L15C9J2P7 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L10C9JJH3 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L13C9JLJ4 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L12C9JPN9 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L11C9JVI0 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L21D6R901 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L18D6R9N7 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L22D6RA61 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L17D6RBQ6 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L19D6RCP7 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L20D6RJB6 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 FOXD2O60548 495 aaPredicted RBP7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 CES1P23141 567 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 ZAP70P43403 619 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 USP17L24Q0WX57 530 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 RAD18Q9NS91 495 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 TMEM63CQ9P1W3 806 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 AP4E1Q9UPM8 1137 aa7.26□□□□□ -1.25
SMCHD1-209ENST00000583441 TMEM265A0A087WTH1 108 aa7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 FAM87AP0C7U9 286 aa7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 UBTFP17480 764 aaKnown RBP7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 PDE12Q6L8Q7 609 aaKnown RBP7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 C16orf46Q6P387 395 aa7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 CNTN3Q9P232 1028 aa7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 MAFBQ9Y5Q3 323 aaPredicted RBP7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.25□□□□□ -1.25
SMCHD1-209ENST00000583441 FAM26DQ5JW98 314 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 HP1BP3Q5SSJ5 553 aaPredicted RBP7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 FYB2Q5VWT5 728 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 ZNF438Q7Z4V0 828 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 NXPE3Q969Y0 559 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 SAP130Q9H0E3 1048 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 CTNND2Q9UQB3 1225 aa7.24□□□□□ -1.25
SMCHD1-209ENST00000583441 TCAF2A6NFQ2 919 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 FAM196BA6NMK8 535 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 ESRRAP11474 423 aaPredicted RBP7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 TMEM67Q5HYA8 995 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 ATG14Q6ZNE5 492 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 ARXQ96QS3 562 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 DIRC2Q96SL1 478 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 PARD6AQ9NPB6 346 aa7.23□□□□□ -1.25
SMCHD1-209ENST00000583441 RAD21O60216 631 aa7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 NUAK1O60285 661 aa7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 SYN1P17600 705 aa7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 FKBP5Q13451 457 aaPredicted RBP7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 MKNK2Q9HBH9 465 aa7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 CD320Q9NPF0 282 aa7.22□□□□□ -1.25
SMCHD1-209ENST00000583441 SUPT5HO00267 1087 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms