RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 LAMB1P07942 1786 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 TCP10L2B9ZVM9 353 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 TLR2O60603 784 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 TWISTNBQ3B726 338 aaPredicted RBP16.24■□□□□ 0.19
SS18-219ENST00000581570 MFSD14BQ5SR56 506 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 CDAN1Q8IWY9 1227 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 DZIP1LQ8IYY4 767 aaKnown RBP16.24■□□□□ 0.19
SS18-219ENST00000581570 LINS1Q8NG48 757 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.24■□□□□ 0.19
SS18-219ENST00000581570 DNAAF4Q8WXU2 420 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 ARHGAP39Q9C0H5 1083 aa16.24■□□□□ 0.19
SS18-219ENST00000581570 TNNI2P48788 182 aa16.23■□□□□ 0.19
SS18-219ENST00000581570 LACTBP83111 547 aaPredicted RBP16.23■□□□□ 0.19
SS18-219ENST00000581570 FOXO4P98177 505 aa16.23■□□□□ 0.19
SS18-219ENST00000581570 FLIIQ13045 1269 aa16.23■□□□□ 0.19
SS18-219ENST00000581570 FKBP5Q13451 457 aaPredicted RBP16.23■□□□□ 0.19
SS18-219ENST00000581570 DPF3Q92784 378 aa16.23■□□□□ 0.19
SS18-219ENST00000581570 TMEM39BQ9GZU3 492 aa16.23■□□□□ 0.19
SS18-219ENST00000581570 GNRH1P01148 92 aa16.22■□□□□ 0.19
SS18-219ENST00000581570 CETPP11597 493 aa16.22■□□□□ 0.19
SS18-219ENST00000581570 PRMT2P55345 433 aa16.22■□□□□ 0.19
SS18-219ENST00000581570 LDHAL6AQ6ZMR3 332 aa16.22■□□□□ 0.19
SS18-219ENST00000581570 TDRD7Q8NHU6 1098 aaKnown RBP16.22■□□□□ 0.19
SS18-219ENST00000581570 RNF39Q9H2S5 420 aa16.22■□□□□ 0.19
SS18-219ENST00000581570 SPDYE5A6NIY4 337 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 BTBD19C9JJ37 291 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 CRKP46108 304 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 TAF7LQ5H9L4 462 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 ZNF594Q96JF6 807 aaPredicted RBP16.21■□□□□ 0.19
SS18-219ENST00000581570 ZCCHC17Q9NP64 241 aaKnown RBP16.21■□□□□ 0.19
SS18-219ENST00000581570 CNNM1Q9NRU3 951 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 RBM27Q9P2N5 1060 aaKnown RBP16.21■□□□□ 0.19
SS18-219ENST00000581570 ECM29Q5VYK3 1845 aa16.21■□□□□ 0.19
SS18-219ENST00000581570 HIBADHP31937 336 aaKnown RBP16.2■□□□□ 0.18
SS18-219ENST00000581570 MTFR1Q15390 333 aa16.2■□□□□ 0.18
SS18-219ENST00000581570 CCDC57Q2TAC2 916 aa16.2■□□□□ 0.18
SS18-219ENST00000581570 LMBR1LQ6UX01 489 aa16.2■□□□□ 0.18
SS18-219ENST00000581570 ERO1BQ86YB8 467 aa16.2■□□□□ 0.18
SS18-219ENST00000581570 ECM2O94769 699 aaPredicted RBP16.19■□□□□ 0.18
SS18-219ENST00000581570 GYG1P46976 350 aa16.19■□□□□ 0.18
SS18-219ENST00000581570 SNAPC2Q13487 334 aa16.19■□□□□ 0.18
SS18-219ENST00000581570 UBE4AQ14139 1066 aa16.19■□□□□ 0.18
SS18-219ENST00000581570 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
SS18-219ENST00000581570 SNCAIPQ9Y6H5 919 aa16.19■□□□□ 0.18
SS18-219ENST00000581570 IRF6O14896 467 aa16.18■□□□□ 0.18
SS18-219ENST00000581570 NKX2-3Q8TAU0 364 aa16.18■□□□□ 0.18
SS18-219ENST00000581570 FAM84BQ96KN1 310 aaPredicted RBP16.18■□□□□ 0.18
SS18-219ENST00000581570 WRNIP1Q96S55 665 aa16.18■□□□□ 0.18
SS18-219ENST00000581570 HOXD10P28358 340 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 PSMC4P43686 418 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 PPIL2Q13356 520 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 EPHA10Q5JZY3 1008 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 C17orf99Q6UX52 265 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 ZKSCAN4Q969J2 545 aaPredicted RBP16.17■□□□□ 0.18
SS18-219ENST00000581570 HTATIP2Q9BUP3 242 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 PRKRIP1Q9H875 184 aaPredicted RBP16.17■□□□□ 0.18
SS18-219ENST00000581570 SRRDQ9UH36 339 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 OTOFQ9HC10 1997 aa16.17■□□□□ 0.18
SS18-219ENST00000581570 DLL1O00548 723 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 GRK4P32298 578 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 CACNB3P54284 484 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 GRIK5Q16478 980 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 BEND3Q5T5X7 828 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 SLC17A8Q8NDX2 589 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 RAET1EQ8TD07 263 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 CPA4Q9UI42 421 aa16.16■□□□□ 0.18
SS18-219ENST00000581570 F6X3S4 739 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 FMNL1O95466 1100 aaPredicted RBP16.15■□□□□ 0.18
SS18-219ENST00000581570 GJB1P08034 283 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 OSBPP22059 807 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 CTGFP29279 349 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 GJA8P48165 433 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 HDLBPQ00341 1268 aaKnown RBP16.15■□□□□ 0.18
SS18-219ENST00000581570 HOOK2Q96ED9 719 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 TRIM47Q96LD4 638 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 TMOD2Q9NZR1 351 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 RIPOR2Q9Y4F9 1068 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 NR2E3Q9Y5X4 410 aa16.15■□□□□ 0.18
SS18-219ENST00000581570 CCL5P13501 91 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 PPATQ06203 517 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 CHAF1AQ13111 956 aaPredicted RBP16.14■□□□□ 0.17
SS18-219ENST00000581570 CCDC27Q2M243 656 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 DCAF15Q66K64 600 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 UBE2Q1Q7Z7E8 422 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 FAM83AQ86UY5 434 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 VPS37DQ86XT2 251 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 WWC1Q8IX03 1113 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 TEKT1Q969V4 418 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 RNF208Q9H0X6 261 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 PRO3102Q9H379 93 aa16.14■□□□□ 0.17
SS18-219ENST00000581570 BIN2Q9UBW5 565 aaPredicted RBP16.14■□□□□ 0.17
SS18-219ENST00000581570 IQSEC3Q9UPP2 1182 aaPredicted RBP16.14■□□□□ 0.17
SS18-219ENST00000581570 GRM8O00222 908 aa16.13■□□□□ 0.17
SS18-219ENST00000581570 PDHXO00330 501 aa16.13■□□□□ 0.17
SS18-219ENST00000581570 FRAT2O75474 233 aaPredicted RBP16.13■□□□□ 0.17
SS18-219ENST00000581570 UBXN2AP68543 259 aa16.13■□□□□ 0.17
SS18-219ENST00000581570 FBXO33Q7Z6M2 555 aa16.13■□□□□ 0.17
SS18-219ENST00000581570 ANKRD23Q86SG2 305 aa16.13■□□□□ 0.17
SS18-219ENST00000581570 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.13■□□□□ 0.17
SS18-219ENST00000581570 TBC1D22AQ8WUA7 517 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms