RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 HDLBPQ00341 1268 aaKnown RBP13.35□□□□□ -0.27
RFFL-209ENST00000581265 OTOP1Q7RTM1 612 aa13.35□□□□□ -0.27
RFFL-209ENST00000581265 ANKRD13AQ8IZ07 590 aa13.35□□□□□ -0.27
RFFL-209ENST00000581265 ANKRD44Q8N8A2 993 aa13.35□□□□□ -0.27
RFFL-209ENST00000581265 TDRD3Q9H7E2 651 aaKnown RBP13.35□□□□□ -0.27
RFFL-209ENST00000581265 TESPA1A2RU30 521 aaPredicted RBP13.34□□□□□ -0.27
RFFL-209ENST00000581265 IGF2BP3O00425 579 aaKnown RBP eCLIP13.34□□□□□ -0.27
RFFL-209ENST00000581265 PDE8BO95263 885 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 LRRC24Q50LG9 513 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 VGLL2Q8N8G2 317 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 ERO1AQ96HE7 468 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 TEPSINQ96N21 525 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 MRIQ9BWK5 157 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 USP44Q9H0E7 712 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 PTPN22Q9Y2R2 807 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 PTPRCP08575 1304 aa13.34□□□□□ -0.27
RFFL-209ENST00000581265 GJA5P36382 358 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 CRKP46108 304 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 CAVIN4Q5BKX8 364 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 OTUD7BQ6GQQ9 843 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 VPS37DQ86XT2 251 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 TBC1D22AQ8WUA7 517 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 SSH1Q8WYL5 1049 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 ECM29Q5VYK3 1845 aa13.33□□□□□ -0.28
RFFL-209ENST00000581265 E9PSI1 815 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 GRIK5Q16478 980 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 SLC4A8Q2Y0W8 1093 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 METTL24Q5JXM2 366 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 PTPN18Q99952 460 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 EFCC1Q9HA90 598 aa13.32□□□□□ -0.28
RFFL-209ENST00000581265 IQSEC3Q9UPP2 1182 aaPredicted RBP13.32□□□□□ -0.28
RFFL-209ENST00000581265 TCP10L2B9ZVM9 353 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 H0YGN5 161 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 TNNI2P48788 182 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 BCAMP50895 628 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 MAP3K9P80192 1104 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 SLFN5Q08AF3 891 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.31□□□□□ -0.28
RFFL-209ENST00000581265 CDAN1Q8IWY9 1227 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 CD99L2Q8TCZ2 262 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 OPTNQ96CV9 577 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 MS4A4AQ96JQ5 239 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 TMEM39BQ9GZU3 492 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 SUGT1Q9Y2Z0 365 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 KIF16BQ96L93 1317 aa13.31□□□□□ -0.28
RFFL-209ENST00000581265 FRAT2O75474 233 aaPredicted RBP13.3□□□□□ -0.28
RFFL-209ENST00000581265 FGFR2P21802 821 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 CHAF1AQ13111 956 aaPredicted RBP13.3□□□□□ -0.28
RFFL-209ENST00000581265 CRHR2Q13324 411 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 FKBP1CQ5VVH2 108 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 CHRDL2Q6WN34 429 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 NBPF11Q86T75 865 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 KLHDC4Q8TBB5 520 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 TEKT1Q969V4 418 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 ARMC5Q96C12 935 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 ZDHHC15Q96MV8 337 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 ELP3Q9H9T3 547 aa13.3□□□□□ -0.28
RFFL-209ENST00000581265 IFIT1P09914 478 aaKnown RBP13.29□□□□□ -0.28
RFFL-209ENST00000581265 ARHGEF6Q15052 776 aa13.29□□□□□ -0.28
RFFL-209ENST00000581265 PUM3Q15397 648 aaKnown RBP13.29□□□□□ -0.28
RFFL-209ENST00000581265 ALDH1L2Q3SY69 923 aa13.29□□□□□ -0.28
RFFL-209ENST00000581265 APOBEC3HQ6NTF7 200 aaKnown RBP13.29□□□□□ -0.28
RFFL-209ENST00000581265 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.29□□□□□ -0.28
RFFL-209ENST00000581265 LAMB1P07942 1786 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 EYA2O00167 538 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 RFX5P48382 616 aaPredicted RBP13.28□□□□□ -0.28
RFFL-209ENST00000581265 SP3Q02447 781 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 VGLL4Q14135 290 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 HHIPL2Q6UWX4 724 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 FAM83AQ86UY5 434 aa13.28□□□□□ -0.28
RFFL-209ENST00000581265 GTF2A2P52657 109 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 SLC9C1Q4G0N8 1177 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 TRMT2AQ8IZ69 625 aaKnown RBP13.27□□□□□ -0.29
RFFL-209ENST00000581265 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 BRI3BPQ8WY22 251 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 LPIN2Q92539 896 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 DPF3Q92784 378 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 HOOK2Q96ED9 719 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 CSADQ9Y600 493 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 MAST3O60307 1309 aa13.27□□□□□ -0.29
RFFL-209ENST00000581265 CCL15-CCL14A0A0B4J2E2 113 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 SPDYE5A6NIY4 337 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 MYCP01106 439 aaPredicted RBP13.26□□□□□ -0.29
RFFL-209ENST00000581265 CACNB3P54284 484 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 KIAA0100Q14667 2235 aaKnown RBP13.26□□□□□ -0.29
RFFL-209ENST00000581265 CCL15Q16663 113 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 ATG9AQ7Z3C6 839 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 WDR66Q8TBY9 1149 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 OTUD5Q96G74 571 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 TMOD2Q9NZR1 351 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 FBXO3Q9UK99 471 aa13.26□□□□□ -0.29
RFFL-209ENST00000581265 SLC5A1P13866 664 aa13.25□□□□□ -0.29
RFFL-209ENST00000581265 ERO1BQ86YB8 467 aa13.25□□□□□ -0.29
RFFL-209ENST00000581265 CDCA7LQ96GN5 454 aa13.25□□□□□ -0.29
RFFL-209ENST00000581265 ZFYVE28Q9HCC9 887 aa13.25□□□□□ -0.29
RFFL-209ENST00000581265 ARAP2Q8WZ64 1704 aa13.25□□□□□ -0.29
RFFL-209ENST00000581265 CIAO1O76071 339 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 CT47B1P0C2W7 299 aaPredicted RBP13.24□□□□□ -0.29
RFFL-209ENST00000581265 CAP1Q01518 475 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 TAF1CQ15572 869 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms