RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TAF6LQ9Y6J9 622 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 GALR2O43603 387 aaPredicted RBP12.56□□□□□ -0.4
SS18-217ENST00000580958 MCM2P49736 904 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 CHAF1AQ13111 956 aaPredicted RBP12.56□□□□□ -0.4
SS18-217ENST00000580958 C15orf52Q6ZUT6 534 aaKnown RBP12.56□□□□□ -0.4
SS18-217ENST00000580958 MASTLQ96GX5 879 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 TTC14Q96N46 770 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 ZSWIM6Q9HCJ5 1215 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 RAI14Q9P0K7 980 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 ABCF2Q9UG63 623 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 NSFL1CQ9UNZ2 370 aaKnown RBP12.56□□□□□ -0.4
SS18-217ENST00000580958 PDS5AQ29RF7 1337 aaKnown RBP12.56□□□□□ -0.4
SS18-217ENST00000580958 DUOX1Q9NRD9 1551 aa12.56□□□□□ -0.4
SS18-217ENST00000580958 KIF13BQ9NQT8 1826 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 CDK5RAP2Q96SN8 1893 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 A0A0G2JLW4 131 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 FOXP2O15409 715 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 HSP90AA1P07900 732 aaKnown RBP12.55□□□□□ -0.4
SS18-217ENST00000580958 CYP21A2P08686 494 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 PSMA5P28066 241 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 TSGA10IPQ3SY00 556 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 ZNF804AQ7Z570 1209 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 ILDR1Q86SU0 546 aaPredicted RBP12.55□□□□□ -0.4
SS18-217ENST00000580958 IL27Q8NEV9 243 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 TBC1D16Q8TBP0 767 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 ZNF622Q969S3 477 aaKnown RBP eCLIP12.55□□□□□ -0.47e-7■■□□□ 12.2
SS18-217ENST00000580958 PODXL2Q9NZ53 605 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 ATP6V0A2Q9Y487 856 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 CYP46A1Q9Y6A2 500 aa12.55□□□□□ -0.4
SS18-217ENST00000580958 MBD4O95243 580 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 CYP7A1P22680 504 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 ALDH1B1P30837 517 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 AK2P54819 239 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 KRT32Q14532 448 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 TTLL5Q6EMB2 1281 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 STOX1Q6ZVD7 989 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 RUFY3Q7L099 469 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 CCDC125Q86Z20 511 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 AIDAQ96BJ3 306 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 TMX3Q96JJ7 454 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 PDRG1Q9NUG6 133 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 POLLQ9UGP5 575 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
SS18-217ENST00000580958 H0YIN7 160 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 C6orf229H3BNL8 230 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 COL9A3Q14050 684 aaPredicted RBP12.53□□□□□ -0.4
SS18-217ENST00000580958 STYK1Q6J9G0 422 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 BLOC1S2Q6QNY1 142 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 OLFM4Q6UX06 510 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 TDRD7Q8NHU6 1098 aaKnown RBP12.53□□□□□ -0.4
SS18-217ENST00000580958 STRBPQ96SI9 672 aaKnown RBP12.53□□□□□ -0.4
SS18-217ENST00000580958 ARMT1Q9H993 441 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 CTNNA3Q9UI47 895 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 LAMB1P07942 1786 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 C10orf71Q711Q0 1435 aa12.53□□□□□ -0.4
SS18-217ENST00000580958 FGAP02671 866 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 RPS6KB1P23443 525 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 CHRNA5P30532 468 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 DDIT3P35638 169 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 NAA16Q6N069 864 aaPredicted RBP12.52□□□□□ -0.41
SS18-217ENST00000580958 ADGRA1Q86SQ6 560 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 LCORLQ8N3X6 602 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 MIGA1Q8NAN2 632 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 SLC16A10Q8TF71 515 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 TCEANC2Q96MN5 208 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 NEK1Q96PY6 1258 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 LARP6Q9BRS8 491 aaKnown RBP12.52□□□□□ -0.41
SS18-217ENST00000580958 CHMP5Q9NZZ3 219 aa12.52□□□□□ -0.41
SS18-217ENST00000580958 TIAM2Q8IVF5 1701 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 NAV1Q8NEY1 1877 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 E7EWF7 191 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 APPP05067 770 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 HAND2P61296 217 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 CUL4AQ13619 759 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 IMMTQ16891 758 aaKnown RBP12.51□□□□□ -0.41
SS18-217ENST00000580958 MPNDQ8N594 471 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 ZNF384Q8TF68 577 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 TSPYL2Q9H2G4 693 aaPredicted RBP12.51□□□□□ -0.41
SS18-217ENST00000580958 CD209Q9NNX6 404 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 LIMCH1Q9UPQ0 1083 aa12.51□□□□□ -0.41
SS18-217ENST00000580958 ZNF646O15015 1829 aaPredicted RBP12.51□□□□□ -0.41
SS18-217ENST00000580958 MAGEB6P1A0A0J9YX57 407 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 PATL2C9JE40 543 aaKnown RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 RIMBP2O15034 1052 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 PRKAB2O43741 272 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 IL1R1P14778 569 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 DYNLL1P63167 89 aaKnown RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 MECOMQ03112 1051 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 ALX1Q15699 326 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 SPTY2D1Q68D10 685 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 DPP8Q6V1X1 898 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 ZGPATQ8N5A5 531 aaKnown RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 WDR66Q8TBY9 1149 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 CNKSR1Q969H4 720 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 NSUN4Q96CB9 384 aaKnown RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 TMX4Q9H1E5 349 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 ALDH8A1Q9H2A2 487 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 EPB41L4AQ9HCS5 686 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 CIZ1Q9ULV3 898 aaPredicted RBP12.5□□□□□ -0.41
SS18-217ENST00000580958 SLC4A4Q9Y6R1 1079 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms