RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 TMEM87BQ96K49 555 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 TMX4Q9H1E5 349 aaPredicted RBP13.11□□□□□ -0.31
SKA2-204ENST00000578519 LRRC4BQ9NT99 713 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 ARAP2Q8WZ64 1704 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 MAGEB6P1A0A0J9YX57 407 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 GYS1P13807 737 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 TM4SF1P30408 202 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 SART3Q15020 963 aaKnown RBP13.1□□□□□ -0.31
SKA2-204ENST00000578519 SYNE3Q6ZMZ3 975 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 ZNF804AQ7Z570 1209 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 TMTC2Q8N394 836 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 NECAB1Q8N987 351 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 RGS22Q8NE09 1264 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 WDR66Q8TBY9 1149 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 FAM84BQ96KN1 310 aaPredicted RBP13.1□□□□□ -0.31
SKA2-204ENST00000578519 LARP6Q9BRS8 491 aaKnown RBP13.1□□□□□ -0.31
SKA2-204ENST00000578519 ZSCAN16Q9H4T2 348 aaPredicted RBP13.1□□□□□ -0.31
SKA2-204ENST00000578519 LMBRD1Q9NUN5 540 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 ANKIB1Q9P2G1 1089 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 ABCF2Q9UG63 623 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 WWC3Q9ULE0 1092 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 XDHP47989 1333 aa13.1□□□□□ -0.31
SKA2-204ENST00000578519 SBF2Q86WG5 1849 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 VPS37CA5D8V6 355 aaPredicted RBP13.09□□□□□ -0.31
SKA2-204ENST00000578519 H3BQV1 296 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 PRC1O43663 620 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 CDKL5O76039 1030 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 MBD4O95243 580 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 LDHCP07864 332 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 PCP11498 1178 aaKnown RBP13.09□□□□□ -0.31
SKA2-204ENST00000578519 GYG1P46976 350 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 TDO2P48775 406 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 EVCP57679 992 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 GSTO1P78417 241 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 PKP1Q13835 747 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 IFFO2Q5TF58 517 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 NAA16Q6N069 864 aaPredicted RBP13.09□□□□□ -0.31
SKA2-204ENST00000578519 GIMAP6Q6P9H5 292 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 C15orf52Q6ZUT6 534 aaKnown RBP13.09□□□□□ -0.31
SKA2-204ENST00000578519 C3orf67Q6ZVT6 689 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 IFNL3Q8IZI9 196 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 CRAMP1Q96RY5 1269 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 TFCP2L1Q9NZI6 479 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 NAP1L2Q9ULW6 460 aaPredicted RBP13.09□□□□□ -0.31
SKA2-204ENST00000578519 SLC4A4Q9Y6R1 1079 aa13.09□□□□□ -0.31
SKA2-204ENST00000578519 COL24A1Q17RW2 1714 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 ERICH2A1L162 156 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 LETM1O95202 739 aaPredicted RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 LARGE1O95461 756 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 APBA3O96018 575 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 CHGBP05060 677 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 SLC3A2P08195 630 aaKnown RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 KRT85P78386 507 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 STK3Q13188 491 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 SLFNL1Q499Z3 407 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 FOXD4L5Q5VV16 416 aaPredicted RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 PRR5LQ6MZQ0 368 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 STOX1Q6ZVD7 989 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 FOXD4L4Q8WXT5 416 aaPredicted RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 TCEANC2Q96MN5 208 aa13.08□□□□□ -0.32
SKA2-204ENST00000578519 NOL10Q9BSC4 688 aaKnown RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 GZF1Q9H116 711 aaPredicted RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 ATF5Q9Y2D1 282 aaPredicted RBP13.08□□□□□ -0.32
SKA2-204ENST00000578519 TAF1LQ8IZX4 1826 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 CPLX1O14810 134 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 MRE11P49959 708 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 HAND2P61296 217 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 ATL3Q6DD88 541 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 TTLL5Q6EMB2 1281 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 MFSD6Q6ZSS7 791 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 SLF2Q8IX21 1173 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 MB21D2Q8IYB1 491 aaPredicted RBP13.07□□□□□ -0.32
SKA2-204ENST00000578519 TMEM87AQ8NBN3 555 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 MTMR6Q9Y217 621 aa13.07□□□□□ -0.32
SKA2-204ENST00000578519 PDIA3P30101 505 aaKnown RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 ALDH1B1P30837 517 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 HOXA10P31260 410 aaPredicted RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 APOBRQ0VD83 1088 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 CRY2Q49AN0 593 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 AKNAD1Q5T1N1 836 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 AMOTL1Q8IY63 956 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 SMARCC2Q8TAQ2 1214 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 ANP32BQ92688 251 aaKnown RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 CRNKL1Q9BZJ0 848 aaKnown RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 SCAND2PQ9GZW5 306 aaPredicted RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 ARMT1Q9H993 441 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 GGA1Q9UJY5 639 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 CFAP45Q9UL16 551 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 ANGEL1Q9UNK9 670 aaKnown RBP13.06□□□□□ -0.32
SKA2-204ENST00000578519 TAF6LQ9Y6J9 622 aa13.06□□□□□ -0.32
SKA2-204ENST00000578519 GSG1L2A8MUP6 293 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 SNAP23O00161 211 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 BAG3O95817 575 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 PDE6BP35913 854 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 FXR2P51116 673 aaKnown RBP eCLIP13.05□□□□□ -0.32
SKA2-204ENST00000578519 UBE2HP62256 183 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 NFXL1Q6ZNB6 911 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 SMIM5Q71RC9 77 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 STAG1Q8WVM7 1258 aa13.05□□□□□ -0.32
SKA2-204ENST00000578519 BRIP1Q9BX63 1249 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms