RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 USP17L4A6NCW7 530 aa18.32■□□□□ 0.52
SS18-206ENST00000577572 GTF2IP78347 998 aa18.32■□□□□ 0.52
SS18-206ENST00000577572 DOK7Q18PE1 504 aa18.32■□□□□ 0.52
SS18-206ENST00000577572 MFSD14BQ5SR56 506 aa18.32■□□□□ 0.52
SS18-206ENST00000577572 USP17L1Q7RTZ2 530 aa18.32■□□□□ 0.52
SS18-206ENST00000577572 DZIP1Q86YF9 867 aaKnown RBP18.32■□□□□ 0.52
SS18-206ENST00000577572 U3KPZ7 1027 aaPredicted RBP18.32■□□□□ 0.52
SS18-206ENST00000577572 NFKBIEO00221 500 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 CYP7A1P22680 504 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 HDLBPQ00341 1268 aaKnown RBP18.31■□□□□ 0.52
SS18-206ENST00000577572 MECOMQ03112 1051 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 AIDAQ96BJ3 306 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 IL25Q9H293 177 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 ZNRF3Q9ULT6 936 aa18.31■□□□□ 0.52
SS18-206ENST00000577572 RBM19Q9Y4C8 960 aaKnown RBP18.31■□□□□ 0.52
SS18-206ENST00000577572 ARFGEF1Q9Y6D6 1849 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 MYH13Q9UKX3 1938 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 GPAA1O43292 621 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 PRDX5P30044 214 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 HSPA4P34932 840 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 RNF20Q5VTR2 975 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 ZNF589Q86UQ0 364 aaPredicted RBP18.3■□□□□ 0.52
SS18-206ENST00000577572 NIM1KQ8IY84 436 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 PUS7LQ9H0K6 701 aaKnown RBP18.3■□□□□ 0.52
SS18-206ENST00000577572 DBNDD1Q9H9R9 158 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 ZNF277Q9NRM2 450 aaPredicted RBP18.3■□□□□ 0.52
SS18-206ENST00000577572 CTNNA3Q9UI47 895 aa18.3■□□□□ 0.52
SS18-206ENST00000577572 ZMYM6O95789 1325 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 FER1L6Q2WGJ9 1857 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 BAG3O95817 575 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 PPP4CP60510 307 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 ALX1Q15699 326 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 DACT2Q5SW24 774 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 JDP2Q8WYK2 163 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 KCNB2Q92953 911 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 STRBPQ96SI9 672 aaKnown RBP18.29■□□□□ 0.52
SS18-206ENST00000577572 SEC62Q99442 399 aaKnown RBP18.29■□□□□ 0.52
SS18-206ENST00000577572 MYH7P12883 1935 aa18.29■□□□□ 0.52
SS18-206ENST00000577572 M0R2C6 588 aa18.28■□□□□ 0.52
SS18-206ENST00000577572 HSPD1P10809 573 aaKnown RBP18.28■□□□□ 0.52
SS18-206ENST00000577572 PLCG2P16885 1265 aa18.28■□□□□ 0.52
SS18-206ENST00000577572 NECTIN1Q15223 517 aa18.28■□□□□ 0.52
SS18-206ENST00000577572 GIMAP6Q6P9H5 292 aa18.28■□□□□ 0.52
SS18-206ENST00000577572 MAST2Q6P0Q8 1798 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 GAKO14976 1311 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 MAGEB6P1A0A0J9YX57 407 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 PATL2C9JE40 543 aaKnown RBP18.27■□□□□ 0.52
SS18-206ENST00000577572 VIL1P09327 827 aaKnown RBP18.27■□□□□ 0.52
SS18-206ENST00000577572 ZKSCAN1P17029 563 aaPredicted RBP18.27■□□□□ 0.52
SS18-206ENST00000577572 TSGA10IPQ3SY00 556 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 HHIPL2Q6UWX4 724 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 ZNF384Q8TF68 577 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 NOL10Q9BSC4 688 aaKnown RBP18.27■□□□□ 0.52
SS18-206ENST00000577572 NACAP1Q9BZK3 213 aa18.27■□□□□ 0.52
SS18-206ENST00000577572 MROH7-TTC4A0A0A0MT08 1334 aa18.26■□□□□ 0.51
SS18-206ENST00000577572 CHGBP05060 677 aa18.26■□□□□ 0.51
SS18-206ENST00000577572 PTH1RQ03431 593 aa18.26■□□□□ 0.51
SS18-206ENST00000577572 RIOK1Q9BRS2 568 aaKnown RBP18.26■□□□□ 0.51
SS18-206ENST00000577572 RBM8AQ9Y5S9 174 aaKnown RBP18.26■□□□□ 0.51
SS18-206ENST00000577572 GPR75-ASB3A0A0A6YYF3 556 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 YDJCA8MPS7 323 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 MBD4O95243 580 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
SS18-206ENST00000577572 KRT32Q14532 448 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 TNIP1Q15025 636 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 CCDC129Q6ZRS4 1044 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 CERS5Q8N5B7 392 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 AGBL3Q8NEM8 1001 aa18.25■□□□□ 0.51
SS18-206ENST00000577572 LMNB1P20700 586 aa18.24■□□□□ 0.51
SS18-206ENST00000577572 SLFNL1Q499Z3 407 aa18.24■□□□□ 0.51
SS18-206ENST00000577572 RSBN1LQ6PCB5 846 aaPredicted RBP18.24■□□□□ 0.51
SS18-206ENST00000577572 CRNKL1Q9BZJ0 848 aaKnown RBP18.24■□□□□ 0.51
SS18-206ENST00000577572 ATP8A2Q9NTI2 1148 aa18.24■□□□□ 0.51
SS18-206ENST00000577572 SERPINA10Q9UK55 444 aa18.24■□□□□ 0.51
SS18-206ENST00000577572 TTF2Q9UNY4 1162 aaKnown RBP18.24■□□□□ 0.51
SS18-206ENST00000577572 JAG2Q9Y219 1238 aa18.24■□□□□ 0.51
SS18-206ENST00000577572 CCDC88AQ3V6T2 1871 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 RPS12P25398 132 aaKnown RBP18.23■□□□□ 0.51
SS18-206ENST00000577572 RABEP1Q15276 862 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 ADGRA1Q86SQ6 560 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 FBXW7Q969H0 707 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 TEKT1Q969V4 418 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 DDRGK1Q96HY6 314 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 TM6SF1Q9BZW5 370 aa18.23■□□□□ 0.51
SS18-206ENST00000577572 FZD9O00144 591 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 NT5C2P49902 561 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 CREB3L3Q68CJ9 461 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 CIAPIN1Q6FI81 312 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 ARHGAP27Q6ZUM4 889 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 LCORLQ8N3X6 602 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 ZDHHC15Q96MV8 337 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 GMLQ99445 158 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 ARMT1Q9H993 441 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 HDAC9Q9UKV0 1011 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 SLC4A4Q9Y6R1 1079 aa18.22■□□□□ 0.51
SS18-206ENST00000577572 SLC27A2O14975 620 aa18.21■□□□□ 0.51
SS18-206ENST00000577572 GRIN3BO60391 1043 aa18.21■□□□□ 0.51
SS18-206ENST00000577572 FGAP02671 866 aa18.21■□□□□ 0.51
SS18-206ENST00000577572 PSMA5P28066 241 aa18.21■□□□□ 0.51
SS18-206ENST00000577572 EIF6P56537 245 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms