RNA–Protein interactions for RNA: ENST00000575426.1

LITAF-217, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 5

Gene LITAF, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-217ENST00000575426 COL1A1P02452 1464 aaPredicted RBP18.61■□□□□ 0.57
LITAF-217ENST00000575426 CRKP46108 304 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 APLP1P51693 650 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 ANGEL2Q5VTE6 544 aaKnown RBP18.61■□□□□ 0.57
LITAF-217ENST00000575426 KRT26Q7Z3Y9 468 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 USP48Q86UV5 1035 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 TEKT1Q969V4 418 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 TLR7Q9NYK1 1049 aaKnown RBP18.61■□□□□ 0.57
LITAF-217ENST00000575426 HMG20BQ9P0W2 317 aa18.61■□□□□ 0.57
LITAF-217ENST00000575426 PITPNM2Q9BZ72 1349 aa18.6■□□□□ 0.57
LITAF-217ENST00000575426 MCAMP43121 646 aa18.6■□□□□ 0.57
LITAF-217ENST00000575426 GRIK5Q16478 980 aa18.6■□□□□ 0.57
LITAF-217ENST00000575426 ERICH6Q7L0X2 663 aa18.6■□□□□ 0.57
LITAF-217ENST00000575426 ZNF512BQ96KM6 892 aaPredicted RBP18.6■□□□□ 0.57
LITAF-217ENST00000575426 MRIQ9BWK5 157 aa18.6■□□□□ 0.57
LITAF-217ENST00000575426 GLIS2Q9BZE0 524 aaPredicted RBP18.6■□□□□ 0.57
LITAF-217ENST00000575426 MYO5AQ9Y4I1 1855 aaKnown RBP18.59■□□□□ 0.57
LITAF-217ENST00000575426 PASKQ96RG2 1323 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 SPDYE2BA6NHP3 402 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 SMARCA5O60264 1052 aaPredicted RBP18.59■□□□□ 0.57
LITAF-217ENST00000575426 SPDYE6P0CI01 402 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 HDAC1Q13547 482 aaPredicted RBP18.59■□□□□ 0.57
LITAF-217ENST00000575426 DZIP1Q86YF9 867 aaKnown RBP18.59■□□□□ 0.57
LITAF-217ENST00000575426 SLF2Q8IX21 1173 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 GCC1Q96CN9 775 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 PRMT6Q96LA8 375 aaPredicted RBP18.59■□□□□ 0.57
LITAF-217ENST00000575426 SNRKQ9NRH2 765 aa18.59■□□□□ 0.57
LITAF-217ENST00000575426 ASTN2O75129 1339 aaPredicted RBP18.58■□□□□ 0.57
LITAF-217ENST00000575426 PRDX5P30044 214 aa18.58■□□□□ 0.56
LITAF-217ENST00000575426 HHIPL2Q6UWX4 724 aa18.58■□□□□ 0.56
LITAF-217ENST00000575426 APOBEC3FQ8IUX4 373 aaKnown RBP18.58■□□□□ 0.56
LITAF-217ENST00000575426 ZBED3Q96IU2 234 aaPredicted RBP18.58■□□□□ 0.56
LITAF-217ENST00000575426 LRP2BPQ9P2M1 347 aa18.58■□□□□ 0.56
LITAF-217ENST00000575426 TRAF5O00463 557 aa18.57■□□□□ 0.56
LITAF-217ENST00000575426 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
LITAF-217ENST00000575426 PI16Q6UXB8 463 aa18.57■□□□□ 0.56
LITAF-217ENST00000575426 RAI14Q9P0K7 980 aa18.57■□□□□ 0.56
LITAF-217ENST00000575426 PCDHAC2Q9Y5I4 1007 aa18.57■□□□□ 0.56
LITAF-217ENST00000575426 TMEM88BA6NKF7 163 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 TBC1D9Q6ZT07 1266 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 GPATCH3Q96I76 525 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 ZDHHC15Q96MV8 337 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 TDRD3Q9H7E2 651 aaKnown RBP18.56■□□□□ 0.56
LITAF-217ENST00000575426 ZNF408Q9H9D4 720 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 VEZTQ9HBM0 779 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 AK9Q5TCS8 1911 aa18.56■□□□□ 0.56
LITAF-217ENST00000575426 CLRN2A0PK11 232 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 ADM5C9JUS6 153 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 LDHCP07864 332 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 ZAP70P43403 619 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 GSTO1P78417 241 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 ANKRD45Q5TZF3 282 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 TMOD2Q9NZR1 351 aa18.55■□□□□ 0.56
LITAF-217ENST00000575426 CELF2O95319 508 aaKnown RBP18.54■□□□□ 0.56
LITAF-217ENST00000575426 FMR1Q06787 632 aaKnown RBP eCLIP18.54■□□□□ 0.56
LITAF-217ENST00000575426 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.54■□□□□ 0.56
LITAF-217ENST00000575426 CREBZFQ9NS37 354 aa18.54■□□□□ 0.56
LITAF-217ENST00000575426 ZNF70Q9UC06 446 aaPredicted RBP18.54■□□□□ 0.56
LITAF-217ENST00000575426 IGSF3O75054 1194 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 CYP2E1P05181 493 aaPredicted RBP18.53■□□□□ 0.56
LITAF-217ENST00000575426 NF2P35240 595 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 TNNI2P48788 182 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 MECOMQ03112 1051 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 TNFAIP1Q13829 316 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 TTF1Q15361 905 aaPredicted RBP18.53■□□□□ 0.56
LITAF-217ENST00000575426 DIXDC1Q155Q3 683 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 SPDYE2Q495Y8 402 aa18.53■□□□□ 0.56
LITAF-217ENST00000575426 SCAF8Q9UPN6 1271 aaKnown RBP18.53■□□□□ 0.56
LITAF-217ENST00000575426 ATP5JP18859 108 aa18.52■□□□□ 0.56
LITAF-217ENST00000575426 CDCA5Q96FF9 252 aa18.52■□□□□ 0.56
LITAF-217ENST00000575426 DNAJC2Q99543 621 aaKnown RBP18.52■□□□□ 0.56
LITAF-217ENST00000575426 NOL10Q9BSC4 688 aaKnown RBP18.52■□□□□ 0.56
LITAF-217ENST00000575426 ABT1Q9ULW3 272 aaKnown RBP18.52■□□□□ 0.56
LITAF-217ENST00000575426 DAGLAQ9Y4D2 1042 aa18.52■□□□□ 0.56
LITAF-217ENST00000575426 MAST2Q6P0Q8 1798 aa18.52■□□□□ 0.55
LITAF-217ENST00000575426 DOCK2Q92608 1830 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 NAA16Q6N069 864 aaPredicted RBP18.51■□□□□ 0.55
LITAF-217ENST00000575426 APOBEC3HQ6NTF7 200 aaKnown RBP18.51■□□□□ 0.55
LITAF-217ENST00000575426 C2orf69Q8N8R5 385 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 FAM163AQ96GL9 167 aaPredicted RBP18.51■□□□□ 0.55
LITAF-217ENST00000575426 DEFB129Q9H1M3 183 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 BOLA2Q9H3K6 86 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 ECHDC1Q9NTX5 307 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 PPP2R3BQ9Y5P8 575 aa18.51■□□□□ 0.55
LITAF-217ENST00000575426 TCP10L2B9ZVM9 353 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 IDH1O75874 414 aaKnown RBP18.5■□□□□ 0.55
LITAF-217ENST00000575426 IGHDP01880 384 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 HTRA3P83110 453 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 MAP3K12Q12852 859 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 CST9Q5W186 159 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 DLK2Q6UY11 383 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 NSUN4Q96CB9 384 aaKnown RBP18.5■□□□□ 0.55
LITAF-217ENST00000575426 USP40Q9NVE5 1235 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 NDUFB9Q9Y6M9 179 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 MYH7P12883 1935 aa18.5■□□□□ 0.55
LITAF-217ENST00000575426 MROH7-TTC4A0A0A0MT08 1334 aa18.49■□□□□ 0.55
LITAF-217ENST00000575426 PRAMEF18Q5VWM3 479 aa18.49■□□□□ 0.55
LITAF-217ENST00000575426 B4GALNT3Q6L9W6 998 aa18.49■□□□□ 0.55
LITAF-217ENST00000575426 PIH1D3Q9NQM4 214 aaKnown RBP18.49■□□□□ 0.55
LITAF-217ENST00000575426 GAKO14976 1311 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms