RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PLBD2Q8NHP8 589 aa21.32■■□□□ 1
VPS53-218ENST00000575207 AOX1Q06278 1338 aa21.31■■□□□ 1
VPS53-218ENST00000575207 IRF6O14896 467 aa21.31■■□□□ 1
VPS53-218ENST00000575207 HSP90B1P14625 803 aaKnown RBP21.31■■□□□ 1
VPS53-218ENST00000575207 ELNP15502 786 aa21.31■■□□□ 1
VPS53-218ENST00000575207 CFAP100Q494V2 611 aa21.31■■□□□ 1
VPS53-218ENST00000575207 ERO1BQ86YB8 467 aa21.31■■□□□ 1
VPS53-218ENST00000575207 MYLIPQ8WY64 445 aa21.31■■□□□ 1
VPS53-218ENST00000575207 TEPSINQ96N21 525 aa21.31■■□□□ 1
VPS53-218ENST00000575207 NUDCQ9Y266 331 aa21.31■■□□□ 1
VPS53-218ENST00000575207 U2AF1L5P0DN76 240 aaPredicted RBP21.3■■□□□ 1
VPS53-218ENST00000575207 CCT4P50991 539 aaKnown RBP21.3■■□□□ 1
VPS53-218ENST00000575207 U2AF1Q01081 240 aaKnown RBP eCLIP21.3■■□□□ 1
VPS53-218ENST00000575207 IRF5Q13568 498 aa21.3■■□□□ 1
VPS53-218ENST00000575207 TNFAIP1Q13829 316 aa21.29■■□□□ 1
VPS53-218ENST00000575207 ANKRD23Q86SG2 305 aa21.29■■□□□ 1
VPS53-218ENST00000575207 CERS5Q8N5B7 392 aa21.29■■□□□ 1
VPS53-218ENST00000575207 C11orf49Q9H6J7 331 aa21.29■■□□□ 1
VPS53-218ENST00000575207 MINPP1Q9UNW1 487 aa21.29■■□□□ 1
VPS53-218ENST00000575207 SNCAIPQ9Y6H5 919 aa21.29■■□□□ 1
VPS53-218ENST00000575207 BCRP11274 1271 aa21.28■■□□□ 1
VPS53-218ENST00000575207 FLT3LGP49771 235 aa21.28■■□□□ 1
VPS53-218ENST00000575207 ZBTB38Q8NAP3 1195 aaPredicted RBP21.28■■□□□ 1
VPS53-218ENST00000575207 HSPA5P11021 654 aaKnown RBP21.27■■□□□ 1
VPS53-218ENST00000575207 FOSL2P15408 326 aa21.27■■□□□ 1
VPS53-218ENST00000575207 EIF4G2P78344 907 aaKnown RBP eCLIP21.27■■□□□ 12e-8■■■■■ 33.8
VPS53-218ENST00000575207 MDM2Q00987 491 aaPredicted RBP21.27■■□□□ 1
VPS53-218ENST00000575207 PPIL2Q13356 520 aa21.27■■□□□ 1
VPS53-218ENST00000575207 CDAN1Q8IWY9 1227 aa21.27■■□□□ 1
VPS53-218ENST00000575207 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.27■■□□□ 1
VPS53-218ENST00000575207 PDHXO00330 501 aa21.26■□□□□ 0.99
VPS53-218ENST00000575207 CFAP53Q96M91 514 aa21.26■□□□□ 0.99
VPS53-218ENST00000575207 MGAMO43451 1857 aa21.25■□□□□ 0.99
VPS53-218ENST00000575207 BSDC1Q9NW68 430 aaPredicted RBP21.25■□□□□ 0.99
VPS53-218ENST00000575207 LEMD3Q9Y2U8 911 aa21.25■□□□□ 0.99
VPS53-218ENST00000575207 PDE8AO60658 829 aa21.24■□□□□ 0.99
VPS53-218ENST00000575207 TTYH1Q9H313 450 aaPredicted RBP21.24■□□□□ 0.99
VPS53-218ENST00000575207 CACNA1AO00555 2505 aa21.24■□□□□ 0.99
VPS53-218ENST00000575207 SPDYE2Q495Y8 402 aa21.23■□□□□ 0.99
VPS53-218ENST00000575207 CCDC85AQ96PX6 553 aaPredicted RBP21.23■□□□□ 0.99
VPS53-218ENST00000575207 CDC5LQ99459 802 aaKnown RBP21.23■□□□□ 0.99
VPS53-218ENST00000575207 TSPYL4Q9UJ04 414 aa21.23■□□□□ 0.99
VPS53-218ENST00000575207 DNAH12Q6ZR08 3092 aa21.23■□□□□ 0.99
VPS53-218ENST00000575207 C1QTNF1Q9BXJ1 281 aa21.22■□□□□ 0.99
VPS53-218ENST00000575207 ZNF70Q9UC06 446 aaPredicted RBP21.22■□□□□ 0.99
VPS53-218ENST00000575207 PFASO15067 1338 aa21.22■□□□□ 0.99
VPS53-218ENST00000575207 DLG5Q8TDM6 1919 aa21.21■□□□□ 0.99
VPS53-218ENST00000575207 DDX60LQ5H9U9 1706 aaKnown RBP21.21■□□□□ 0.99
VPS53-218ENST00000575207 F8W031 263 aaPredicted RBP21.21■□□□□ 0.99
VPS53-218ENST00000575207 KLRK1P26718 216 aa21.21■□□□□ 0.99
VPS53-218ENST00000575207 PPATQ06203 517 aa21.21■□□□□ 0.99
VPS53-218ENST00000575207 USP38Q8NB14 1042 aa21.21■□□□□ 0.99
VPS53-218ENST00000575207 CD209Q9NNX6 404 aa21.21■□□□□ 0.99
VPS53-218ENST00000575207 FKBP1AP62942 108 aaKnown RBP21.2■□□□□ 0.98
VPS53-218ENST00000575207 PARK7Q99497 189 aaKnown RBP21.2■□□□□ 0.98
VPS53-218ENST00000575207 TMEM39BQ9GZU3 492 aa21.2■□□□□ 0.98
VPS53-218ENST00000575207 OGDHLQ9ULD0 1010 aa21.2■□□□□ 0.98
VPS53-218ENST00000575207 MOGSQ13724 837 aa21.19■□□□□ 0.98
VPS53-218ENST00000575207 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.19■□□□□ 0.98
VPS53-218ENST00000575207 ATXN2LQ8WWM7 1075 aaKnown RBP21.19■□□□□ 0.98
VPS53-218ENST00000575207 ZKSCAN4Q969J2 545 aaPredicted RBP21.19■□□□□ 0.98
VPS53-218ENST00000575207 HCN4Q9Y3Q4 1203 aa21.19■□□□□ 0.98
VPS53-218ENST00000575207 MUC6Q6W4X9 2439 aa21.19■□□□□ 0.98
VPS53-218ENST00000575207 PCCAP05165 728 aaPredicted RBP21.18■□□□□ 0.98
VPS53-218ENST00000575207 KCNH4Q9UQ05 1017 aa21.18■□□□□ 0.98
VPS53-218ENST00000575207 COL6A1P12109 1028 aa21.17■□□□□ 0.98
VPS53-218ENST00000575207 RBM5P52756 815 aaKnown RBP eCLIP21.17■□□□□ 0.98
VPS53-218ENST00000575207 ADAMTS19Q8TE59 1207 aa21.17■□□□□ 0.98
VPS53-218ENST00000575207 WRNIP1Q96S55 665 aa21.17■□□□□ 0.98
VPS53-218ENST00000575207 BABAM1Q9NWV8 329 aa21.17■□□□□ 0.98
VPS53-218ENST00000575207 CHPF2Q9P2E5 772 aa21.17■□□□□ 0.98
VPS53-218ENST00000575207 TNPO2O14787 897 aaKnown RBP21.16■□□□□ 0.98
VPS53-218ENST00000575207 SMAD3P84022 425 aaKnown RBP21.16■□□□□ 0.98
VPS53-218ENST00000575207 LBHD1Q9BQE6 289 aaPredicted RBP21.16■□□□□ 0.98
VPS53-218ENST00000575207 TDRD3Q9H7E2 651 aaKnown RBP21.16■□□□□ 0.98
VPS53-218ENST00000575207 ARAP2Q8WZ64 1704 aa21.15■□□□□ 0.98
VPS53-218ENST00000575207 CYP2C8P10632 490 aa21.15■□□□□ 0.98
VPS53-218ENST00000575207 TNNI2P48788 182 aa21.15■□□□□ 0.98
VPS53-218ENST00000575207 ASB2Q96Q27 587 aa21.15■□□□□ 0.98
VPS53-218ENST00000575207 UHRF1Q96T88 793 aaPredicted RBP21.15■□□□□ 0.98
VPS53-218ENST00000575207 TIMELESSQ9UNS1 1208 aa21.15■□□□□ 0.98
VPS53-218ENST00000575207 LRRC26Q2I0M4 334 aa21.14■□□□□ 0.97
VPS53-218ENST00000575207 HMX1Q9NP08 348 aaPredicted RBP21.14■□□□□ 0.97
VPS53-218ENST00000575207 DOCK3Q8IZD9 2030 aa21.13■□□□□ 0.97
VPS53-218ENST00000575207 TCP10L2B9ZVM9 353 aa21.13■□□□□ 0.97
VPS53-218ENST00000575207 HMGCRP04035 888 aa21.13■□□□□ 0.97
VPS53-218ENST00000575207 NFE2L2Q16236 605 aa21.13■□□□□ 0.97
VPS53-218ENST00000575207 ALYREFQ86V81 257 aaKnown RBP21.13■□□□□ 0.97
VPS53-218ENST00000575207 NEFMP07197 916 aa21.12■□□□□ 0.97
VPS53-218ENST00000575207 GPAT2Q6NUI2 795 aa21.12■□□□□ 0.97
VPS53-218ENST00000575207 CCDC191Q8NCU4 936 aa21.12■□□□□ 0.97
VPS53-218ENST00000575207 ANKRD2Q9GZV1 360 aa21.12■□□□□ 0.97
VPS53-218ENST00000575207 SERPINA10Q9UK55 444 aa21.12■□□□□ 0.97
VPS53-218ENST00000575207 CTSWP56202 376 aa21.11■□□□□ 0.97
VPS53-218ENST00000575207 CNGB1Q14028 1251 aaPredicted RBP21.11■□□□□ 0.97
VPS53-218ENST00000575207 SHHQ15465 462 aa21.11■□□□□ 0.97
VPS53-218ENST00000575207 TTLL11Q8NHH1 800 aa21.11■□□□□ 0.97
VPS53-218ENST00000575207 TAOK2Q9UL54 1235 aa21.11■□□□□ 0.97
VPS53-218ENST00000575207 IL1R1P14778 569 aa21.1■□□□□ 0.97
VPS53-218ENST00000575207 C15orf52Q6ZUT6 534 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms