RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GOLGA8FQ08AF8 430 aa19.81■□□□□ 0.76
VPS53-215ENST00000573028 GOLGA8DPQ0D2H9 430 aa19.81■□□□□ 0.76
VPS53-215ENST00000573028 ALG1Q9BT22 464 aa19.81■□□□□ 0.76
VPS53-215ENST00000573028 POLR3EQ9NVU0 708 aa19.81■□□□□ 0.76
VPS53-215ENST00000573028 C1orf167Q5SNV9 1468 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 IDH1O75874 414 aaKnown RBP19.8■□□□□ 0.76
VPS53-215ENST00000573028 YEATS4O95619 227 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 SYCP1Q15431 976 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 MB21D2Q8IYB1 491 aaPredicted RBP19.8■□□□□ 0.76
VPS53-215ENST00000573028 MYL10Q9BUA6 226 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 SLU7O95391 586 aaKnown RBP19.8■□□□□ 0.76
VPS53-215ENST00000573028 KIF23Q02241 960 aaPredicted RBP19.8■□□□□ 0.76
VPS53-215ENST00000573028 SERPINC1P01008 464 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 GPTP24298 496 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 SYKP43405 635 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 FBXO38Q6PIJ6 1188 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 APPBP2Q92624 585 aa19.8■□□□□ 0.76
VPS53-215ENST00000573028 DDX41Q9UJV9 622 aaKnown RBP19.8■□□□□ 0.76
VPS53-215ENST00000573028 MROH7-TTC4A0A0A0MT08 1334 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 NRDCO43847 1150 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 NLRP12P59046 1061 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 FAM177A1Q8N128 213 aaPredicted RBP19.79■□□□□ 0.76
VPS53-215ENST00000573028 NKX2-3Q8TAU0 364 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 PPP1R13BQ96KQ4 1090 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 CLIC6Q96NY7 704 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 SCN11AQ9UI33 1791 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 FANCCQ00597 558 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 METTL24Q5JXM2 366 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 NFXL1Q6ZNB6 911 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 BRAPQ7Z569 592 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 ZNF397Q8NF99 534 aaPredicted RBP19.79■□□□□ 0.76
VPS53-215ENST00000573028 AKAP2Q9Y2D5 859 aa19.79■□□□□ 0.76
VPS53-215ENST00000573028 PNOCQ13519 176 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 ERCC6LQ2NKX8 1250 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 CFAP100Q494V2 611 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 SLC9C2Q5TAH2 1124 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 INCENPQ9NQS7 918 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 METAP2P50579 478 aaKnown RBP eCLIP19.78■□□□□ 0.76
VPS53-215ENST00000573028 IFIT5Q13325 482 aaKnown RBP19.78■□□□□ 0.76
VPS53-215ENST00000573028 SPECC1Q5M775 1068 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 LRRN4CLQ8ND94 238 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 ZCRB1Q8TBF4 217 aaKnown RBP19.78■□□□□ 0.76
VPS53-215ENST00000573028 ERO1AQ96HE7 468 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 OSBPL5Q9H0X9 879 aaPredicted RBP19.78■□□□□ 0.76
VPS53-215ENST00000573028 SENP2Q9HC62 589 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 AXDND1Q5T1B0 1012 aaPredicted RBP19.78■□□□□ 0.76
VPS53-215ENST00000573028 VPS37DQ86XT2 251 aa19.78■□□□□ 0.76
VPS53-215ENST00000573028 B4E1Z4 1266 aa19.77■□□□□ 0.76
VPS53-215ENST00000573028 UBE2Q2LH0YL09 131 aa19.77■□□□□ 0.76
VPS53-215ENST00000573028 CIAO1O76071 339 aa19.77■□□□□ 0.76
VPS53-215ENST00000573028 ZFYP08048 801 aaPredicted RBP19.77■□□□□ 0.76
VPS53-215ENST00000573028 CCDC150Q8NCX0 1101 aa19.77■□□□□ 0.76
VPS53-215ENST00000573028 ARFGEF2Q9Y6D5 1785 aa19.77■□□□□ 0.76
VPS53-215ENST00000573028 IMPACTQ9P2X3 320 aa19.77■□□□□ 0.75
VPS53-215ENST00000573028 CCDC82Q8N4S0 544 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 DPF2Q92785 391 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 CMA1P23946 247 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 NEDD4P46934 1319 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 UBASH3AP57075 661 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 NCAPHQ15003 741 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 KRT40Q6A162 431 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 LDHAL6AQ6ZMR3 332 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 DNAI1Q9UI46 699 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 EVCP57679 992 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 CYB5R4Q7L1T6 521 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 TMX1Q9H3N1 280 aa19.76■□□□□ 0.75
VPS53-215ENST00000573028 TBC1D10CQ8IV04 446 aa19.75■□□□□ 0.75
VPS53-215ENST00000573028 PRDM11Q9NQV5 511 aa19.75■□□□□ 0.75
VPS53-215ENST00000573028 CNNM1Q9NRU3 951 aa19.75■□□□□ 0.75
VPS53-215ENST00000573028 ATP2B1P20020 1258 aa19.75■□□□□ 0.75
VPS53-215ENST00000573028 TOMM22Q9NS69 142 aa19.75■□□□□ 0.75
VPS53-215ENST00000573028 ANGEL1Q9UNK9 670 aaKnown RBP19.75■□□□□ 0.75
VPS53-215ENST00000573028 MCAMP43121 646 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 SLC39A14Q15043 492 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 STRN4Q9NRL3 753 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 CDC27P30260 824 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.74■□□□□ 0.753e-7■■■■□ 22.8
VPS53-215ENST00000573028 ST7Q9NRC1 585 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 TRIM29Q14134 588 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 CPLX2Q6PUV4 134 aaKnown RBP19.74■□□□□ 0.75
VPS53-215ENST00000573028 ADAMTS7Q9UKP4 1686 aa19.74■□□□□ 0.75
VPS53-215ENST00000573028 KIF2AO00139 706 aaPredicted RBP19.73■□□□□ 0.75
VPS53-215ENST00000573028 TCIRG1Q13488 830 aa19.73■□□□□ 0.75
VPS53-215ENST00000573028 SHC4Q6S5L8 630 aa19.73■□□□□ 0.75
VPS53-215ENST00000573028 KRT222Q8N1A0 295 aa19.73■□□□□ 0.75
VPS53-215ENST00000573028 UTP14AQ9BVJ6 771 aaKnown RBP19.73■□□□□ 0.75
VPS53-215ENST00000573028 PDILTQ8N807 584 aa19.73■□□□□ 0.75
VPS53-215ENST00000573028 HELBQ8NG08 1087 aaPredicted RBP19.73■□□□□ 0.75
VPS53-215ENST00000573028 TMEM232C9JQI7 657 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 RRP12Q5JTH9 1297 aaKnown RBP19.72■□□□□ 0.75
VPS53-215ENST00000573028 CNNM3Q8NE01 707 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 SLC26A6Q9BXS9 759 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 NBPF3Q9H094 633 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 CAMTA1Q9Y6Y1 1673 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 IARSP41252 1262 aaKnown RBP19.72■□□□□ 0.75
VPS53-215ENST00000573028 OLFM4Q6UX06 510 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 BPIFA3Q9BQP9 254 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 ATG3Q9NT62 314 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 FANCLQ9NW38 375 aa19.72■□□□□ 0.75
VPS53-215ENST00000573028 MORC2Q9Y6X9 1032 aaPredicted RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms