RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TRIM29Q14134 588 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 E4F1Q66K89 784 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 MNS1Q8NEH6 495 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 ZNF594Q96JF6 807 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 GPHNQ9NQX3 736 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 MYH15Q9Y2K3 1946 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 KIF23Q02241 960 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-207ENST00000572253 ARMCX5Q6P1M9 558 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 RGS22Q8NE09 1264 aa12.44□□□□□ -0.42
CCDC40-207ENST00000572253 SCN11AQ9UI33 1791 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 CCDC66A2RUB6 948 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 CYP27B1O15528 508 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 MB21D2Q8IYB1 491 aaPredicted RBP12.43□□□□□ -0.42
CCDC40-207ENST00000572253 L2HGDHQ9H9P8 463 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 HOOK1Q9UJC3 728 aaKnown RBP12.43□□□□□ -0.42
CCDC40-207ENST00000572253 PLEKHG2Q9H7P9 1386 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 WDR19Q8NEZ3 1342 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 MYO1BO43795 1136 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 FGAP02671 866 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 UBASH3AP57075 661 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 MYL5Q02045 173 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 CFAP100Q494V2 611 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 SRRTQ9BXP5 876 aaKnown RBP12.43□□□□□ -0.42
CCDC40-207ENST00000572253 ZBTB3Q9H5J0 574 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 SLC39A14Q15043 492 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 TTLL7Q6ZT98 887 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 RAB11FIP4Q86YS3 637 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 ALG1Q9BT22 464 aa12.43□□□□□ -0.42
CCDC40-207ENST00000572253 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.43□□□□□ -0.42
CCDC40-207ENST00000572253 MARCKSP29966 332 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-207ENST00000572253 UBXN4Q92575 508 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 MEGF6O75095 1541 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 LAMA4Q16363 1823 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 ZSCAN12O43309 604 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 ETF1P62495 437 aaKnown RBP12.42□□□□□ -0.42
CCDC40-207ENST00000572253 FAM193AP78312 1265 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 CREBRFQ8IUR6 639 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 XAGE2Q96GT9 111 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 TOP1P11387 765 aaKnown RBP12.42□□□□□ -0.42
CCDC40-207ENST00000572253 METAP2P50579 478 aaKnown RBP eCLIP12.42□□□□□ -0.42
CCDC40-207ENST00000572253 ABCC6O95255 1503 aa12.42□□□□□ -0.42
CCDC40-207ENST00000572253 TPM1P09493 284 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 AXDND1Q5T1B0 1012 aaPredicted RBP12.41□□□□□ -0.42
CCDC40-207ENST00000572253 DNAI1Q9UI46 699 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 PHLPP2Q6ZVD8 1323 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 NBPF26B4DH59 902 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 ERCC6LQ2NKX8 1250 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 NBPF14Q5TI25 921 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 ISM2Q6H9L7 571 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 NBPF10Q6P3W6 841 aaKnown RBP12.41□□□□□ -0.42
CCDC40-207ENST00000572253 NBPF15Q8N660 670 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 PUS3Q9BZE2 481 aaKnown RBP12.41□□□□□ -0.42
CCDC40-207ENST00000572253 TAOK2Q9UL54 1235 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 HPS5Q9UPZ3 1129 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 ARFGEF2Q9Y6D5 1785 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 SPEF2Q9C093 1822 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 ZMYM6O95789 1325 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 PPP6R2O75170 966 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 CDK11BP21127 795 aaKnown RBP12.41□□□□□ -0.42
CCDC40-207ENST00000572253 TERF2Q15554 542 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 CCDC102BQ68D86 513 aa12.41□□□□□ -0.42
CCDC40-207ENST00000572253 ANGEL1Q9UNK9 670 aaKnown RBP12.41□□□□□ -0.42
CCDC40-207ENST00000572253 GPAA1O43292 621 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 NCAPHQ15003 741 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 NFXL1Q6ZNB6 911 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 KIF28PB7ZC32 967 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 APPP05067 770 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 ARHGAP29Q52LW3 1261 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 TMCO3Q6UWJ1 677 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 FCHSD1Q86WN1 690 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 ABCC12Q96J65 1359 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 GOLGA6L9A6NEM1 432 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 SLFN14P0C7P3 912 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 VPS37DQ86XT2 251 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 TUBE1Q9UJT0 475 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 TMEM94Q12767 1356 aa12.4□□□□□ -0.42
CCDC40-207ENST00000572253 ZAP70P43403 619 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 KRT40Q6A162 431 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 CNNM3Q8NE01 707 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 CUTAO60888 179 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 URI1O94763 535 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-207ENST00000572253 ADORA1P30542 326 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 IFIT5Q13325 482 aaKnown RBP12.39□□□□□ -0.43
CCDC40-207ENST00000572253 C19orf44Q9H6X5 657 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 DACH1Q9UI36 760 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 CPDO75976 1380 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 A1BGP04217 495 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 ATF3P18847 181 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 ANTXR2P58335 489 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 SAFBQ15424 915 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC40-207ENST00000572253 CHRNA2Q15822 529 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 GJB4Q9NTQ9 266 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 KIF1AQ12756 1690 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 C1orf167Q5SNV9 1468 aa12.39□□□□□ -0.43
CCDC40-207ENST00000572253 WDHD1O75717 1129 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-207ENST00000572253 H2AFXP16104 143 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-207ENST00000572253 IARSP41252 1262 aaKnown RBP12.38□□□□□ -0.43
CCDC40-207ENST00000572253 TTF1Q15361 905 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-207ENST00000572253 HSP90AB3PQ58FF7 597 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms