RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPGRQ92834 1020 aaKnown RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 KCNB2Q92953 911 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 BRIP1Q9BX63 1249 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 TBC1D2Q9BYX2 928 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 LSG1Q9H089 658 aaKnown RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 EMILIN3Q9NT22 766 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 STK32BQ9NY57 414 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 PDS5AQ29RF7 1337 aaKnown RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 KLRG2A4D1S0 409 aaPredicted RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 GOLIM4O00461 696 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 HSP90AA1P07900 732 aaKnown RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 ALDH1B1P30837 517 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 HOXA10P31260 410 aaPredicted RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 PDE6BP35913 854 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 NMIQ13287 307 aaPredicted RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 ANKRD1Q15327 319 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 UBE3CQ15386 1083 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 CRY2Q49AN0 593 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 VPS37DQ86XT2 251 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 CRAMP1Q96RY5 1269 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 DSCC1Q9BVC3 393 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 CWC22Q9HCG8 908 aaKnown RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 SEC31BQ9NQW1 1179 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 DENND2AQ9ULE3 1009 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 MINPP1Q9UNW1 487 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 PARP3Q9Y6F1 533 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.54□□□□□ -0.88
VPS39-213ENST00000570062 BCORQ6W2J9 1755 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 SCN7AQ01118 1682 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 SBF2Q86WG5 1849 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 CCDC171Q6TFL3 1326 aa9.54□□□□□ -0.88
VPS39-213ENST00000570062 ZMYM1Q5SVZ6 1142 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 PRR5LQ6MZQ0 368 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 ZGPATQ8N5A5 531 aaKnown RBP9.53□□□□□ -0.88
VPS39-213ENST00000570062 SPATA5Q8NB90 893 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 APPBP2Q92624 585 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 KIF2CQ99661 725 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 PCDHGA10Q9Y5H3 936 aa9.53□□□□□ -0.88
VPS39-213ENST00000570062 MYH14Q7Z406 1995 aaKnown RBP9.53□□□□□ -0.88
VPS39-213ENST00000570062 SPEF2Q9C093 1822 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 POLRMTO00411 1230 aaKnown RBP9.52□□□□□ -0.89
VPS39-213ENST00000570062 TAF5LO75529 589 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 GNAT2P19087 354 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 ATP2B4P23634 1241 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 C1QTNF8P60827 252 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 NECTIN1Q15223 517 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 SLC15A2Q16348 729 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 WASHC4Q2M389 1173 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 GRIPAP1Q4V328 841 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 C15orf52Q6ZUT6 534 aaKnown RBP9.52□□□□□ -0.89
VPS39-213ENST00000570062 SLC16A10Q8TF71 515 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 ZSCAN31Q96LW9 406 aaPredicted RBP9.52□□□□□ -0.89
VPS39-213ENST00000570062 CYP46A1Q9Y6A2 500 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 ZNF804BA4D1E1 1349 aa9.52□□□□□ -0.89
VPS39-213ENST00000570062 RPAP1Q9BWH6 1393 aaPredicted RBP9.51□□□□□ -0.89
VPS39-213ENST00000570062 MED23Q9ULK4 1368 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 PPP1R3GB7ZBB8 358 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 NPR1P16066 1061 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 ADORA1P30542 326 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 HIBADHP31937 336 aaKnown RBP9.51□□□□□ -0.89
VPS39-213ENST00000570062 ZAP70P43403 619 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 NT5C2P49902 561 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 NEK4P51957 841 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 SPTY2D1Q68D10 685 aaPredicted RBP9.51□□□□□ -0.89
VPS39-213ENST00000570062 COL23A1Q86Y22 540 aaPredicted RBP9.51□□□□□ -0.89
VPS39-213ENST00000570062 CERS3Q8IU89 383 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 FAM227BQ96M60 508 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 CAMKK2Q96RR4 588 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 ALDH8A1Q9H2A2 487 aaPredicted RBP9.51□□□□□ -0.89
VPS39-213ENST00000570062 CHMP5Q9NZZ3 219 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 XDHP47989 1333 aa9.51□□□□□ -0.89
VPS39-213ENST00000570062 FRAT2O75474 233 aaPredicted RBP9.5□□□□□ -0.89
VPS39-213ENST00000570062 ADD2P35612 726 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 MCAMP43121 646 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 PHKA1P46020 1223 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 SLC9C2Q5TAH2 1124 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 VPS53Q5VIR6 699 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 CREB3L3Q68CJ9 461 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 FBXO33Q7Z6M2 555 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 SP8Q8IXZ3 490 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 ZNF784Q8NCA9 323 aaPredicted RBP9.5□□□□□ -0.89
VPS39-213ENST00000570062 CELF1Q92879 486 aaKnown RBP9.5□□□□□ -0.89
VPS39-213ENST00000570062 INTS4Q96HW7 963 aaKnown RBP9.5□□□□□ -0.89
VPS39-213ENST00000570062 NACAP1Q9BZK3 213 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 PODXL2Q9NZ53 605 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 RBM8AQ9Y5S9 174 aaKnown RBP9.5□□□□□ -0.89
VPS39-213ENST00000570062 SNX14Q9Y5W7 946 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 LAMB2P55268 1798 aa9.5□□□□□ -0.89
VPS39-213ENST00000570062 A0A0D9SFI3 127 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 CYP2E1P05181 493 aaPredicted RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 PTMSP20962 102 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 NUCB2P80303 420 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 IMMTQ16891 758 aaKnown RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 CC2D2BQ6DHV5 1058 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 PRPF40BQ6NWY9 871 aaKnown RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 ZNF804AQ7Z570 1209 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 AMIGO3Q86WK7 504 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 HELBQ8NG08 1087 aaPredicted RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 WDR66Q8TBY9 1149 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 FBXW7Q969H0 707 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms