RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IQCA1Q86XH1 822 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 C3orf20Q8ND61 904 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 PI4K2BQ8TCG2 481 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 UBXN6Q9BZV1 441 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 MRC1P22897 1456 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 NRDCO43847 1150 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 GNAI3P08754 354 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 RANBP1P43487 201 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 PDCD2Q16342 344 aaPredicted RBP12.45□□□□□ -0.42
CLK3-226ENST00000569406 TSPAN18Q96SJ8 248 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 FAM107BQ9H098 131 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 PI4KAP2A4QPH2 592 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 SGSM2O43147 1006 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 MYSM1Q5VVJ2 828 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 ZNF530Q6P9A1 599 aaPredicted RBP12.45□□□□□ -0.42
CLK3-226ENST00000569406 PI4KAP1Q8N8J0 262 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 GOLGA6CA6NDK9 693 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 GOLGA6BA6NDN3 693 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 ATP8B1O43520 1251 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 GOLGA6DP0CG33 693 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 CC2D1AQ6P1N0 951 aaPredicted RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 ZNF396Q96N95 335 aaPredicted RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 LRRCC1Q9C099 1032 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 GOLGA6AQ9NYA3 693 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 PALD1Q9ULE6 856 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 CHMP3Q9Y3E7 222 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 TMCO5BA8MYB1 307 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 EIF3JO75822 258 aaKnown RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 SNW1Q13573 536 aaKnown RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 NYAP1Q6ZVC0 841 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 KRT28Q7Z3Y7 464 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 TMX3Q96JJ7 454 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 CABS1Q96KC9 395 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 BICC1Q9H694 974 aaKnown RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 PDE11AQ9HCR9 933 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 NEK4P51957 841 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 PPP1R42Q7Z4L9 355 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 HOMER1Q86YM7 354 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 SPDYE1Q8NFV5 336 aaPredicted RBP12.44□□□□□ -0.42
CLK3-226ENST00000569406 ACBD3Q9H3P7 528 aa12.44□□□□□ -0.42
CLK3-226ENST00000569406 BTBD11A6QL63 1104 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 HMMRO75330 724 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 CAPN15O75808 1086 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 ZKSCAN4Q969J2 545 aaPredicted RBP12.43□□□□□ -0.42
CLK3-226ENST00000569406 SPDL1Q96EA4 605 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 FAN1Q9Y2M0 1017 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 CAPN7Q9Y6W3 813 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 SHANK3Q9BYB0 1731 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 PPFIA4O75335 1185 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 CCDC192P0DO97 292 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 EIF2S2P20042 333 aaKnown RBP12.43□□□□□ -0.42
CLK3-226ENST00000569406 CHMLP26374 656 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 CCDC144BQ3MJ40 725 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 CCDC144CPQ8IYA2 1237 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 PECAM1P16284 738 aaPredicted RBP12.43□□□□□ -0.42
CLK3-226ENST00000569406 ANO2Q9NQ90 1003 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 LMCD1Q9NZU5 365 aa12.43□□□□□ -0.42
CLK3-226ENST00000569406 INPP5BP32019 993 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 ACTN3Q08043 901 aaPredicted RBP12.42□□□□□ -0.42
CLK3-226ENST00000569406 HSP90AB4PQ58FF6 505 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 CCAR2Q8N163 923 aaKnown RBP12.42□□□□□ -0.42
CLK3-226ENST00000569406 ESYT1Q9BSJ8 1104 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 C19orf44Q9H6X5 657 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.42□□□□□ -0.429e-7■■■■■ 96.5
CLK3-226ENST00000569406 AKAP2Q9Y2D5 859 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 ELP1O95163 1332 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 EXOC5O00471 708 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 MTX1Q13505 466 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 TSPYL2Q9H2G4 693 aaPredicted RBP12.42□□□□□ -0.42
CLK3-226ENST00000569406 DNAI1Q9UI46 699 aa12.42□□□□□ -0.42
CLK3-226ENST00000569406 PARP4Q9UKK3 1724 aaKnown RBP12.42□□□□□ -0.42
CLK3-226ENST00000569406 ERC2O15083 957 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 CHUKO15111 745 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 EVCP57679 992 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 AMOTQ4VCS5 1084 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 DRAXINQ8NBI3 349 aaPredicted RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 CNNM3Q8NE01 707 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 CCDC102AQ96A19 550 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 TMEM94Q12767 1356 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 DCCP43146 1447 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 FIBPO43427 364 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 CDKL5O76039 1030 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 URI1O94763 535 aaPredicted RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 RPSAP08865 295 aaKnown RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 DDX46Q7L014 1031 aaKnown RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 SAAL1Q96ER3 474 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 CARD6Q9BX69 1037 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 IL1RAPL2Q9NP60 686 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 SRGAP3O43295 1099 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 UBTFL1P0CB47 393 aaPredicted RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 TMX4Q9H1E5 349 aaPredicted RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 RABEP2Q9H5N1 569 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 UTYO14607 1347 aa12.41□□□□□ -0.42
CLK3-226ENST00000569406 USP42Q9H9J4 1324 aaKnown RBP12.41□□□□□ -0.42
CLK3-226ENST00000569406 UBR2Q8IWV8 1755 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 RPS6KA5O75582 802 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 BRD1O95696 1058 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 ZNF75DP51815 510 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 HSP90B2PQ58FF3 399 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms