RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 DPF2Q92785 391 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 XAGE2Q96GT9 111 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 DESI2Q9BSY9 194 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 FANCLQ9NW38 375 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 DIP2AQ14689 1571 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 GOLGA8AA7E2F4 631 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 GPAA1O43292 621 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 CBFA2T2O43439 604 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 IARSP41252 1262 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 RBM6P78332 1123 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 VPS37DQ86XT2 251 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 PLBD2Q8NHP8 589 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 XRN1Q8IZH2 1706 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 TMEM232C9JQI7 657 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 STX17P56962 302 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 ILDR1Q86SU0 546 aaPredicted RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 CMTR1Q8N1G2 835 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 PUS7LQ9H0K6 701 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 INCENPQ9NQS7 918 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 STRN4Q9NRL3 753 aa16.7■□□□□ 0.26
VPS35-210ENST00000568784 EVCP57679 992 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 MYL5Q02045 173 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 CCDC102BQ68D86 513 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 NYAP1Q6ZVC0 841 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 TOM1L2Q6ZVM7 507 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 ALDH8A1Q9H2A2 487 aaPredicted RBP16.69■□□□□ 0.26
VPS35-210ENST00000568784 CLCN6P51797 869 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 TERF2Q15554 542 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 CASQ1P31415 396 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 KRT40Q6A162 431 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 LDHAL6AQ6ZMR3 332 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 LZTFL1Q9NQ48 299 aa16.69■□□□□ 0.26
VPS35-210ENST00000568784 EXOSC10Q01780 885 aaKnown RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 NBPF11Q86T75 865 aa16.68■□□□□ 0.26
VPS35-210ENST00000568784 IFIT3O14879 490 aaKnown RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 ETF1P62495 437 aaKnown RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 IFIT5Q13325 482 aaKnown RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 TMEM67Q5HYA8 995 aa16.68■□□□□ 0.26
VPS35-210ENST00000568784 FAM208AQ9UK61 1670 aaKnown RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 ATL3Q6DD88 541 aa16.68■□□□□ 0.26
VPS35-210ENST00000568784 CCDC12Q8WUD4 166 aaPredicted RBP16.68■□□□□ 0.26
VPS35-210ENST00000568784 AGLP35573 1532 aa16.68■□□□□ 0.26
VPS35-210ENST00000568784 SCARF1Q14162 830 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 AIDAQ96BJ3 306 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.67■□□□□ 0.26
VPS35-210ENST00000568784 SH3TC1Q8TE82 1336 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 VGLL3A8MV65 326 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 WDHD1O75717 1129 aaPredicted RBP16.67■□□□□ 0.26
VPS35-210ENST00000568784 AFMP43652 599 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 BRAPQ7Z569 592 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 IMPACTQ9P2X3 320 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 CCP110O43303 1012 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 ZSCAN12O43309 604 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 YEATS4O95619 227 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 GRAMD1CQ8IYS0 662 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 KCNJ14Q9UNX9 436 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 MORC2Q9Y6X9 1032 aaPredicted RBP16.67■□□□□ 0.26
VPS35-210ENST00000568784 UBE2Q2LH0YL09 131 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 SYCP1Q15431 976 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 NEK11Q8NG66 645 aa16.67■□□□□ 0.26
VPS35-210ENST00000568784 RNF216Q9NWF9 866 aaPredicted RBP16.67■□□□□ 0.26
VPS35-210ENST00000568784 PUF60Q9UHX1 559 aaKnown RBP16.67■□□□□ 0.26
VPS35-210ENST00000568784 ZBTB43O43298 467 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 KIF23Q02241 960 aaPredicted RBP16.66■□□□□ 0.26
VPS35-210ENST00000568784 BBXQ8WY36 941 aaPredicted RBP16.66■□□□□ 0.26
VPS35-210ENST00000568784 HOOK1Q9UJC3 728 aaKnown RBP16.66■□□□□ 0.26
VPS35-210ENST00000568784 PCDHA5Q9Y5H7 936 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 ERBB3P21860 1342 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 FOXN1O15353 648 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 SLFN14P0C7P3 912 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 ATG9AQ7Z3C6 839 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 DCAF5Q96JK2 942 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 ZCCHC17Q9NP64 241 aaKnown RBP16.66■□□□□ 0.26
VPS35-210ENST00000568784 TBC1D2BQ9UPU7 963 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 UTYO14607 1347 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 ATF3P18847 181 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 AKAP17AQ02040 695 aaKnown RBP16.66■□□□□ 0.26
VPS35-210ENST00000568784 SYNE4Q8N205 404 aa16.66■□□□□ 0.26
VPS35-210ENST00000568784 A0A1W2PQ27 194 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 A0A1W2PQ64 194 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 A0A1W2PQD8 194 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 CYP27B1O15528 508 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 COBLO75128 1261 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 CDKL5O76039 1030 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 KCNH3Q9ULD8 1083 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 SLC12A7Q9Y666 1083 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 AKAP2Q9Y2D5 859 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 RGPD8O14715 1765 aaPredicted RBP16.65■□□□□ 0.26
VPS35-210ENST00000568784 MCM6Q14566 821 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 IQSEC3Q9UPP2 1182 aaPredicted RBP16.65■□□□□ 0.26
VPS35-210ENST00000568784 NFE2L3Q9Y4A8 694 aa16.65■□□□□ 0.26
VPS35-210ENST00000568784 SETD1AO15047 1707 aaKnown RBP16.64■□□□□ 0.26
VPS35-210ENST00000568784 hCG_1642624A0A1W2PR95 340 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 POLR2DO15514 142 aaKnown RBP16.64■□□□□ 0.25
VPS35-210ENST00000568784 TNNT3P45378 269 aaPredicted RBP16.64■□□□□ 0.25
VPS35-210ENST00000568784 TIGD1Q96MW7 591 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 BAG1Q99933 345 aaPredicted RBP16.64■□□□□ 0.25
VPS35-210ENST00000568784 NAPBQ9H115 298 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 CMA1P23946 247 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 GYS2P54840 703 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms