RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CHAF1AQ13111 956 aaPredicted RBP10.28□□□□□ -0.76
SF3B3-212ENST00000568539 BMP2KLQ5H9B9 411 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 DACT2Q5SW24 774 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 STRIP1Q5VSL9 837 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 C9orf131Q5VYM1 1079 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 TTLL5Q6EMB2 1281 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 USP17L1Q7RTZ2 530 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 WDR66Q8TBY9 1149 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 EDC3Q96F86 508 aaKnown RBP10.28□□□□□ -0.76
SF3B3-212ENST00000568539 ANTXR1Q9H6X2 564 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 PAG1Q9NWQ8 432 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 RNF181Q9P0P0 153 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 JAG2Q9Y219 1238 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 SALL1Q9NSC2 1324 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 RAD17O75943 681 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 FKBP1AP62942 108 aaKnown RBP10.27□□□□□ -0.77
SF3B3-212ENST00000568539 CXCL9Q07325 125 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 TTF1Q15361 905 aaPredicted RBP10.27□□□□□ -0.77
SF3B3-212ENST00000568539 TBC1D9Q6ZT07 1266 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 CERS5Q8N5B7 392 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 EVI5LQ96CN4 794 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 GPBP1L1Q9HC44 474 aaPredicted RBP10.27□□□□□ -0.77
SF3B3-212ENST00000568539 PIH1D3Q9NQM4 214 aaKnown RBP10.27□□□□□ -0.77
SF3B3-212ENST00000568539 WDR90Q96KV7 1748 aa10.27□□□□□ -0.77
SF3B3-212ENST00000568539 TRIM6-TRIM34B2RNG4 842 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 PSMD14O00487 310 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 VIL1P09327 827 aaKnown RBP10.26□□□□□ -0.77
SF3B3-212ENST00000568539 SDSP20132 328 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 MFSD14BQ5SR56 506 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 CIAPIN1Q6FI81 312 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 CNTROBQ8N137 903 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 ZGPATQ8N5A5 531 aaKnown RBP10.26□□□□□ -0.77
SF3B3-212ENST00000568539 KBTBD3Q8NAB2 608 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 TBC1D22AQ8WUA7 517 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 FBXW7Q969H0 707 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 MXD3Q9BW11 206 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 ZNF541Q9H0D2 1346 aa10.26□□□□□ -0.77
SF3B3-212ENST00000568539 IGSF3O75054 1194 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 PRDX5P30044 214 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 EIF6P56537 245 aaKnown RBP10.25□□□□□ -0.77
SF3B3-212ENST00000568539 TNIP1Q15025 636 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 GRIK5Q16478 980 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 RSBN1LQ6PCB5 846 aaPredicted RBP10.25□□□□□ -0.77
SF3B3-212ENST00000568539 RILPL2Q969X0 211 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 RYDENQ9NUL5 291 aaKnown RBP10.25□□□□□ -0.77
SF3B3-212ENST00000568539 LRP2BPQ9P2M1 347 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 ABCF2Q9UG63 623 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 SUGT1Q9Y2Z0 365 aa10.25□□□□□ -0.77
SF3B3-212ENST00000568539 ZC3H4Q9UPT8 1303 aaKnown RBP10.25□□□□□ -0.77
SF3B3-212ENST00000568539 IDH1O75874 414 aaKnown RBP10.24□□□□□ -0.77
SF3B3-212ENST00000568539 LDHBP07195 334 aaKnown RBP10.24□□□□□ -0.77
SF3B3-212ENST00000568539 HTRA3P83110 453 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 PDAP1Q13442 181 aaKnown RBP10.24□□□□□ -0.77
SF3B3-212ENST00000568539 SPTY2D1Q68D10 685 aaPredicted RBP10.24□□□□□ -0.77
SF3B3-212ENST00000568539 CHRDL2Q6WN34 429 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 ERICH6Q7L0X2 663 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 TICAM2Q86XR7 235 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 ZNF384Q8TF68 577 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 GMLQ99445 158 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 FSD1Q9BTV5 496 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 MYO3BQ8WXR4 1341 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 RFX7Q2KHR2 1363 aa10.24□□□□□ -0.77
SF3B3-212ENST00000568539 CHGBP05060 677 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 RPS12P25398 132 aaKnown RBP10.23□□□□□ -0.77
SF3B3-212ENST00000568539 MECOMQ03112 1051 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 MAP3K12Q12852 859 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 SLC9C2Q5TAH2 1124 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 GPC2Q8N158 579 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 PIP4P2Q8N4L2 257 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 ZNF579Q8NAF0 562 aaKnown RBP10.23□□□□□ -0.77
SF3B3-212ENST00000568539 AGBL3Q8NEM8 1001 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 NSUN4Q96CB9 384 aaKnown RBP10.23□□□□□ -0.77
SF3B3-212ENST00000568539 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.23□□□□□ -0.779e-6■□□□□ 8.3
SF3B3-212ENST00000568539 RAI14Q9P0K7 980 aa10.23□□□□□ -0.77
SF3B3-212ENST00000568539 TCRBV5S4A2TA0A5A2 114 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 KIF3CO14782 793 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 ZFYP08048 801 aaPredicted RBP10.22□□□□□ -0.77
SF3B3-212ENST00000568539 PDE6AP16499 860 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 ADD2P35612 726 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 GMPSP49915 693 aaPredicted RBP10.22□□□□□ -0.77
SF3B3-212ENST00000568539 UBE3CQ15386 1083 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 ZSCAN25Q6NSZ9 544 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 TMED8Q6PL24 325 aaPredicted RBP10.22□□□□□ -0.77
SF3B3-212ENST00000568539 DZIP1Q86YF9 867 aaKnown RBP10.22□□□□□ -0.77
SF3B3-212ENST00000568539 KIAA0825Q8IV33 1275 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 MAGEB6Q8N7X4 407 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 DPF2Q92785 391 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 TTF2Q9UNY4 1162 aaKnown RBP10.22□□□□□ -0.77
SF3B3-212ENST00000568539 GJA3Q9Y6H8 435 aa10.22□□□□□ -0.77
SF3B3-212ENST00000568539 F8W031 263 aaPredicted RBP10.21□□□□□ -0.77
SF3B3-212ENST00000568539 RNF113AO15541 343 aaKnown RBP10.21□□□□□ -0.77
SF3B3-212ENST00000568539 DDNO94850 711 aaPredicted RBP10.21□□□□□ -0.77
SF3B3-212ENST00000568539 USP17L8P0C7I0 530 aa10.21□□□□□ -0.77
SF3B3-212ENST00000568539 CHMLP26374 656 aa10.21□□□□□ -0.77
SF3B3-212ENST00000568539 DIXDC1Q155Q3 683 aa10.21□□□□□ -0.77
SF3B3-212ENST00000568539 LRRFIP1Q32MZ4 808 aaKnown RBP10.21□□□□□ -0.77
SF3B3-212ENST00000568539 SLFNL1Q499Z3 407 aa10.21□□□□□ -0.77
SF3B3-212ENST00000568539 NAA16Q6N069 864 aaPredicted RBP10.21□□□□□ -0.77
SF3B3-212ENST00000568539 ADGRA1Q86SQ6 560 aa10.21□□□□□ -0.77
SF3B3-212ENST00000568539 TNS4Q8IZW8 715 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms