RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	IFNL1	Q8IU54	200 aa		21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	CLMN	Q96JQ2	1002 aa		21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	TDRD3	Q9H7E2	651 aa	Known RBP	21.13	■□□□□ 0.97
CLN3-231	ENST00000568422	TNNI2	P48788	182 aa		21.12	■□□□□ 0.97
CLN3-231	ENST00000568422	MRI	Q9BWK5	157 aa		21.12	■□□□□ 0.97
CLN3-231	ENST00000568422	HPS5	Q9UPZ3	1129 aa		21.12	■□□□□ 0.97
CLN3-231	ENST00000568422	OTOF	Q9HC10	1997 aa		21.12	■□□□□ 0.97
CLN3-231	ENST00000568422	MYH13	Q9UKX3	1938 aa		21.12	■□□□□ 0.97
CLN3-231	ENST00000568422	CT47B1	P0C2W7	299 aa	Predicted RBP	21.11	■□□□□ 0.97
CLN3-231	ENST00000568422	PUM3	Q15397	648 aa	Known RBP	21.11	■□□□□ 0.97
CLN3-231	ENST00000568422	OTUD7B	Q6GQQ9	843 aa		21.11	■□□□□ 0.97
CLN3-231	ENST00000568422	SUGT1	Q9Y2Z0	365 aa		21.11	■□□□□ 0.97
CLN3-231	ENST00000568422	MAST3	O60307	1309 aa		21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	IFIT1	P09914	478 aa	Known RBP	21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	CHAF1A	Q13111	956 aa	Predicted RBP	21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	FBXO46	Q6PJ61	603 aa	Predicted RBP	21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	TRMT2A	Q8IZ69	625 aa	Known RBP	21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	KLHDC4	Q8TBB5	520 aa		21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	TEKT1	Q969V4	418 aa		21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	SMC4	Q9NTJ3	1288 aa		21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	21.1	■□□□□ 0.97
CLN3-231	ENST00000568422	EYA2	O00167	538 aa		21.09	■□□□□ 0.97
CLN3-231	ENST00000568422	SOX10	P56693	466 aa		21.09	■□□□□ 0.97
CLN3-231	ENST00000568422	TEPSIN	Q96N21	525 aa		21.09	■□□□□ 0.97
CLN3-231	ENST00000568422	HDAC5	Q9UQL6	1122 aa		21.09	■□□□□ 0.97
CLN3-231	ENST00000568422	TCP10L2	B9ZVM9	353 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	FGFR2	P21802	821 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	BCAM	P50895	628 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	ZDHHC15	Q96MV8	337 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	R3HDML	Q9H3Y0	253 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	FBXO3	Q9UK99	471 aa		21.08	■□□□□ 0.97
CLN3-231	ENST00000568422	TESPA1	A2RU30	521 aa	Predicted RBP	21.07	■□□□□ 0.96
CLN3-231	ENST00000568422	IGF2BP3	O00425	579 aa	Known RBP eCLIP	21.07	■□□□□ 0.96
CLN3-231	ENST00000568422	RFX5	P48382	616 aa	Predicted RBP	21.07	■□□□□ 0.96
CLN3-231	ENST00000568422	LPIN2	Q92539	896 aa		21.07	■□□□□ 0.96
CLN3-231	ENST00000568422	CDCA7L	Q96GN5	454 aa		21.07	■□□□□ 0.96
CLN3-231	ENST00000568422	SLC5A1	P13866	664 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	GRIK5	Q16478	980 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	FKBP1C	Q5VVH2	108 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	HOOK2	Q96ED9	719 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	TMEM39B	Q9GZU3	492 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	TMOD2	Q9NZR1	351 aa		21.06	■□□□□ 0.96
CLN3-231	ENST00000568422	UBTFL1	P0CB47	393 aa	Predicted RBP	21.05	■□□□□ 0.96
CLN3-231	ENST00000568422	GJA5	P36382	358 aa		21.05	■□□□□ 0.96
CLN3-231	ENST00000568422	HHIPL2	Q6UWX4	724 aa		21.05	■□□□□ 0.96
CLN3-231	ENST00000568422	WDR66	Q8TBY9	1149 aa		21.05	■□□□□ 0.96
CLN3-231	ENST00000568422	OPTN	Q96CV9	577 aa		21.05	■□□□□ 0.96
CLN3-231	ENST00000568422	CIAO1	O76071	339 aa		21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	MAP3K9	P80192	1104 aa		21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	FAM83A	Q86UY5	434 aa		21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	API5	Q9BZZ5	524 aa	Known RBP	21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	ELP3	Q9H9T3	547 aa		21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	CSAD	Q9Y600	493 aa		21.04	■□□□□ 0.96
CLN3-231	ENST00000568422	ATG9A	Q7Z3C6	839 aa		21.03	■□□□□ 0.96
CLN3-231	ENST00000568422	ERO1A	Q96HE7	468 aa		21.03	■□□□□ 0.96
CLN3-231	ENST00000568422	GTF2A2	P52657	109 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	CRHR2	Q13324	411 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	VGLL4	Q14135	290 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	APOBEC3H	Q6NTF7	200 aa	Known RBP	21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	CDAN1	Q8IWY9	1227 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	MS4A4A	Q96JQ5	239 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	PTPN18	Q99952	460 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	NOB1	Q9ULX3	412 aa	Known RBP	21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	PDE4DIP	Q5VU43	2346 aa		21.02	■□□□□ 0.96
CLN3-231	ENST00000568422	GNL3L	Q9NVN8	582 aa	Known RBP	21.01	■□□□□ 0.95
CLN3-231	ENST00000568422	CEP126	Q9P2H0	1117 aa		21.01	■□□□□ 0.95
CLN3-231	ENST00000568422	TRIM17	Q9Y577	477 aa		21.01	■□□□□ 0.95
CLN3-231	ENST00000568422	RPAP1	Q9BWH6	1393 aa	Predicted RBP	21	■□□□□ 0.95
CLN3-231	ENST00000568422	CCER2	I3L3R5	266 aa		21	■□□□□ 0.95
CLN3-231	ENST00000568422	CACNB3	P54284	484 aa		21	■□□□□ 0.95
CLN3-231	ENST00000568422	IL15	P40933	162 aa	Predicted RBP	20.99	■□□□□ 0.95
CLN3-231	ENST00000568422	ATP2B3	Q16720	1220 aa		20.99	■□□□□ 0.95
CLN3-231	ENST00000568422	DCAF15	Q66K64	600 aa		20.99	■□□□□ 0.95
CLN3-231	ENST00000568422	OTOP1	Q7RTM1	612 aa		20.99	■□□□□ 0.95
CLN3-231	ENST00000568422	SIL1	Q9H173	461 aa		20.99	■□□□□ 0.95
CLN3-231	ENST00000568422	SPDYE5	A6NIY4	337 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	SEMA3E	O15041	775 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	ZBTB22	O15209	634 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	SP3	Q02447	781 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	INTS3	Q68E01	1043 aa	Known RBP	20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	ARHGAP45	Q92619	1136 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	OTUD5	Q96G74	571 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	AK9	Q5TCS8	1911 aa		20.98	■□□□□ 0.95
CLN3-231	ENST00000568422	CCL15-CCL14	A0A0B4J2E2	113 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	WDHD1	O75717	1129 aa	Predicted RBP	20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	ARHGEF6	Q15052	776 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	CCL15	Q16663	113 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	ERO1B	Q86YB8	467 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	BRI3BP	Q8WY22	251 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	WRNIP1	Q96S55	665 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	ZFYVE28	Q9HCC9	887 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	COPRS	Q9NQ92	184 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	DENND2A	Q9ULE3	1009 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	LRRFIP2	Q9Y608	721 aa	Known RBP	20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	SALL1	Q9NSC2	1324 aa		20.97	■□□□□ 0.95
CLN3-231	ENST00000568422	FAM151A	Q8WW52	585 aa		20.96	■□□□□ 0.95
CLN3-231	ENST00000568422	CNKSR2	Q8WXI2	1034 aa		20.96	■□□□□ 0.95

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