RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MYH2Q9UKX2 1941 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 PRDX5P30044 214 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 CRKP46108 304 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 HDLBPQ00341 1268 aaKnown RBP12.06□□□□□ -0.48
CLK3-220ENST00000567992 DLGAP5Q15398 846 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 HSP90AB4PQ58FF6 505 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 DNAJC5GQ8N7S2 189 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 DCPSQ96C86 337 aaKnown RBP12.06□□□□□ -0.48
CLK3-220ENST00000567992 CCDC8Q9H0W5 538 aaPredicted RBP12.06□□□□□ -0.48
CLK3-220ENST00000567992 IL1RAPL2Q9NP60 686 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 SUPT16HQ9Y5B9 1047 aaKnown RBP12.06□□□□□ -0.48
CLK3-220ENST00000567992 THSD7BQ9C0I4 1608 aa12.06□□□□□ -0.48
CLK3-220ENST00000567992 TMEM88BA6NKF7 163 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 RAB11FIP3O75154 756 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 AACSQ86V21 672 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 SPATA5Q8NB90 893 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 KIF1BPQ96EK5 621 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 ZNF512BQ96KM6 892 aaPredicted RBP12.05□□□□□ -0.48
CLK3-220ENST00000567992 DCTPP1Q9H773 170 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 PAPPA2Q9BXP8 1791 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 SSC5DA1L4H1 1573 aa12.05□□□□□ -0.48
CLK3-220ENST00000567992 CLRN2A0PK11 232 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 APBB1O00213 710 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 CELF2O95319 508 aaKnown RBP12.04□□□□□ -0.48
CLK3-220ENST00000567992 UQCRFS1P1P0C7P4 283 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 DIXDC1Q155Q3 683 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 SPDYE2Q495Y8 402 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 GORABQ5T7V8 394 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 APOBEC3HQ6NTF7 200 aaKnown RBP12.04□□□□□ -0.48
CLK3-220ENST00000567992 SULF1Q8IWU6 871 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 EXOC6Q8TAG9 804 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 ZNF384Q8TF68 577 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 CDCA5Q96FF9 252 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 ZDHHC15Q96MV8 337 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 MRIQ9BWK5 157 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 MAST3O60307 1309 aa12.04□□□□□ -0.48
CLK3-220ENST00000567992 LDHBP07195 334 aaKnown RBP12.03□□□□□ -0.48
CLK3-220ENST00000567992 CCDC158Q5M9N0 1113 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 TTC39AQ5SRH9 613 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 HHIPL2Q6UWX4 724 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 TBC1D9Q6ZT07 1266 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 APOBEC3FQ8IUX4 373 aaKnown RBP12.03□□□□□ -0.48
CLK3-220ENST00000567992 TEKT1Q969V4 418 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 DAGLAQ9Y4D2 1042 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 GAKO14976 1311 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 CNTNAP1P78357 1384 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 RFX7Q2KHR2 1363 aa12.03□□□□□ -0.48
CLK3-220ENST00000567992 SMARCA5O60264 1052 aaPredicted RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 CYP2E1P05181 493 aaPredicted RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 RBM5P52756 815 aaKnown RBP eCLIP12.02□□□□□ -0.49
CLK3-220ENST00000567992 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 PRAMEF18Q5VWM3 479 aa12.02□□□□□ -0.49
CLK3-220ENST00000567992 CLASRPQ8N2M8 674 aaKnown RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 ZGPATQ8N5A5 531 aaKnown RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 TDRD3Q9H7E2 651 aaKnown RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 SNRKQ9NRH2 765 aa12.02□□□□□ -0.49
CLK3-220ENST00000567992 ZNF70Q9UC06 446 aaPredicted RBP12.02□□□□□ -0.49
CLK3-220ENST00000567992 TLL2Q9Y6L7 1015 aa12.02□□□□□ -0.49
CLK3-220ENST00000567992 CDK5RAP2Q96SN8 1893 aa12.02□□□□□ -0.49
CLK3-220ENST00000567992 OTOFQ9HC10 1997 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 RASSF10A6NK89 507 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 ZAP70P43403 619 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 MECOMQ03112 1051 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 HDAC1Q13547 482 aaPredicted RBP12.01□□□□□ -0.49
CLK3-220ENST00000567992 AAMPQ13685 434 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 SAPCD2Q86UD0 394 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 NSUN4Q96CB9 384 aaKnown RBP12.01□□□□□ -0.49
CLK3-220ENST00000567992 KLRG1Q96E93 195 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 LRRCC1Q9C099 1032 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 DEFB129Q9H1M3 183 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 ZNF408Q9H9D4 720 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 VEZTQ9HBM0 779 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 ABCF2Q9UG63 623 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 NDUFB9Q9Y6M9 179 aa12.01□□□□□ -0.49
CLK3-220ENST00000567992 MYO1BO43795 1136 aa12□□□□□ -0.49
CLK3-220ENST00000567992 CACNB3P54284 484 aa12□□□□□ -0.49
CLK3-220ENST00000567992 DZIP1Q86YF9 867 aaKnown RBP12□□□□□ -0.49
CLK3-220ENST00000567992 CDAN1Q8IWY9 1227 aa12□□□□□ -0.49
CLK3-220ENST00000567992 TEPSINQ96N21 525 aa12□□□□□ -0.49
CLK3-220ENST00000567992 PIH1D3Q9NQM4 214 aaKnown RBP12□□□□□ -0.49
CLK3-220ENST00000567992 MKRN1Q9UHC7 482 aaKnown RBP12□□□□□ -0.49
CLK3-220ENST00000567992 PPP2R3BQ9Y5P8 575 aa12□□□□□ -0.49
CLK3-220ENST00000567992 FOCADQ5VW36 1801 aa12□□□□□ -0.49
CLK3-220ENST00000567992 IFIT2P09913 472 aaKnown RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 IRX6P78412 446 aaPredicted RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 RASA3Q14644 834 aa11.99□□□□□ -0.49
CLK3-220ENST00000567992 SPTY2D1Q68D10 685 aaPredicted RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 CDC42EP5Q6NZY7 148 aa11.99□□□□□ -0.49
CLK3-220ENST00000567992 ERICH6Q7L0X2 663 aa11.99□□□□□ -0.49
CLK3-220ENST00000567992 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLK3-220ENST00000567992 FAM163AQ96GL9 167 aaPredicted RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 ANTXR1Q9H6X2 564 aa11.99□□□□□ -0.49
CLK3-220ENST00000567992 GBA2Q9HCG7 927 aaPredicted RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 ABT1Q9ULW3 272 aaKnown RBP11.99□□□□□ -0.49
CLK3-220ENST00000567992 MROH7-TTC4A0A0A0MT08 1334 aa11.99□□□□□ -0.49
CLK3-220ENST00000567992 MYH7P12883 1935 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 RPAP1Q9BWH6 1393 aaPredicted RBP11.98□□□□□ -0.49
CLK3-220ENST00000567992 TCP10L2B9ZVM9 353 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 FKBP1CQ5VVH2 108 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 MOB2Q70IA6 237 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms