RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 FBXO46Q6PJ61 603 aaPredicted RBP18.77■□□□□ 0.6
CLN3-228ENST00000567804 DZIP1LQ8IYY4 767 aaKnown RBP18.77■□□□□ 0.6
CLN3-228ENST00000567804 ANKRD13AQ8IZ07 590 aa18.77■□□□□ 0.6
CLN3-228ENST00000567804 IQSEC3Q9UPP2 1182 aaPredicted RBP18.77■□□□□ 0.6
CLN3-228ENST00000567804 GJA5P36382 358 aa18.76■□□□□ 0.59
CLN3-228ENST00000567804 CRKP46108 304 aa18.76■□□□□ 0.59
CLN3-228ENST00000567804 VPS37DQ86XT2 251 aa18.76■□□□□ 0.59
CLN3-228ENST00000567804 KLHDC4Q8TBB5 520 aa18.76■□□□□ 0.59
CLN3-228ENST00000567804 TEPSINQ96N21 525 aa18.76■□□□□ 0.59
CLN3-228ENST00000567804 SLFN5Q08AF3 891 aa18.75■□□□□ 0.59
CLN3-228ENST00000567804 CHAF1AQ13111 956 aaPredicted RBP18.75■□□□□ 0.59
CLN3-228ENST00000567804 CAVIN4Q5BKX8 364 aa18.75■□□□□ 0.59
CLN3-228ENST00000567804 CDAN1Q8IWY9 1227 aa18.75■□□□□ 0.59
CLN3-228ENST00000567804 TBC1D22AQ8WUA7 517 aa18.75■□□□□ 0.59
CLN3-228ENST00000567804 USP44Q9H0E7 712 aa18.75■□□□□ 0.59
CLN3-228ENST00000567804 SLC34A2O95436 690 aa18.74■□□□□ 0.59
CLN3-228ENST00000567804 HDLBPQ00341 1268 aaKnown RBP18.74■□□□□ 0.59
CLN3-228ENST00000567804 KIF16BQ96L93 1317 aa18.74■□□□□ 0.59
CLN3-228ENST00000567804 RBBP6Q7Z6E9 1792 aaKnown RBP18.73■□□□□ 0.59
CLN3-228ENST00000567804 TCP10L2B9ZVM9 353 aa18.73■□□□□ 0.59
CLN3-228ENST00000567804 FRAT2O75474 233 aaPredicted RBP18.73■□□□□ 0.59
CLN3-228ENST00000567804 TNNI2P48788 182 aa18.73■□□□□ 0.59
CLN3-228ENST00000567804 ALDH1L2Q3SY69 923 aa18.73■□□□□ 0.59
CLN3-228ENST00000567804 TMEM39BQ9GZU3 492 aa18.73■□□□□ 0.59
CLN3-228ENST00000567804 ELP3Q9H9T3 547 aa18.73■□□□□ 0.59
CLN3-228ENST00000567804 TESPA1A2RU30 521 aaPredicted RBP18.72■□□□□ 0.59
CLN3-228ENST00000567804 FGFR2P21802 821 aa18.72■□□□□ 0.59
CLN3-228ENST00000567804 BCAMP50895 628 aa18.72■□□□□ 0.59
CLN3-228ENST00000567804 OPTNQ96CV9 577 aa18.72■□□□□ 0.59
CLN3-228ENST00000567804 HTTP42858 3142 aa18.71■□□□□ 0.59
CLN3-228ENST00000567804 RFX5P48382 616 aaPredicted RBP18.71■□□□□ 0.59
CLN3-228ENST00000567804 CRHR2Q13324 411 aa18.71■□□□□ 0.59
CLN3-228ENST00000567804 PUM3Q15397 648 aaKnown RBP18.71■□□□□ 0.59
CLN3-228ENST00000567804 OTUD7BQ6GQQ9 843 aa18.71■□□□□ 0.59
CLN3-228ENST00000567804 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.71■□□□□ 0.59
CLN3-228ENST00000567804 TEKT1Q969V4 418 aa18.71■□□□□ 0.59
CLN3-228ENST00000567804 PTPN18Q99952 460 aa18.71■□□□□ 0.59
CLN3-228ENST00000567804 AK9Q5TCS8 1911 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 EYA2O00167 538 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 IFIT1P09914 478 aaKnown RBP18.7■□□□□ 0.58
CLN3-228ENST00000567804 OTOP1Q7RTM1 612 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLN3-228ENST00000567804 CDCA7LQ96GN5 454 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 ZDHHC15Q96MV8 337 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 MRIQ9BWK5 157 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 TRIM17Q9Y577 477 aa18.7■□□□□ 0.58
CLN3-228ENST00000567804 CACNB3P54284 484 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 MAP3K9P80192 1104 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 VGLL4Q14135 290 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 CNKSR2Q8WXI2 1034 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 MS4A4AQ96JQ5 239 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 SMC4Q9NTJ3 1288 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 SUGT1Q9Y2Z0 365 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 MAST3O60307 1309 aa18.69■□□□□ 0.58
CLN3-228ENST00000567804 TRMT2AQ8IZ69 625 aaKnown RBP18.68■□□□□ 0.58
CLN3-228ENST00000567804 ERO1AQ96HE7 468 aa18.68■□□□□ 0.58
CLN3-228ENST00000567804 SLC5A1P13866 664 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 FKBP1CQ5VVH2 108 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 APOBEC3HQ6NTF7 200 aaKnown RBP18.67■□□□□ 0.58
CLN3-228ENST00000567804 ATG9AQ7Z3C6 839 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 FAM83AQ86UY5 434 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 CD99L2Q8TCZ2 262 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 LPIN2Q92539 896 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 TMOD2Q9NZR1 351 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 CSADQ9Y600 493 aa18.67■□□□□ 0.58
CLN3-228ENST00000567804 RPAP1Q9BWH6 1393 aaPredicted RBP18.67■□□□□ 0.58
CLN3-228ENST00000567804 MYH2Q9UKX2 1941 aa18.66■□□□□ 0.58
CLN3-228ENST00000567804 HHIPL2Q6UWX4 724 aa18.66■□□□□ 0.58
CLN3-228ENST00000567804 BRI3BPQ8WY22 251 aa18.66■□□□□ 0.58
CLN3-228ENST00000567804 CENPFP49454 3210 aa18.66■□□□□ 0.58
CLN3-228ENST00000567804 ZSWIM8A7E2V4 1837 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 DOCK2Q92608 1830 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 CCL15-CCL14A0A0B4J2E2 113 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 UBTFL1P0CB47 393 aaPredicted RBP18.65■□□□□ 0.58
CLN3-228ENST00000567804 GTF2A2P52657 109 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 SP3Q02447 781 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 CCL15Q16663 113 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 WDR66Q8TBY9 1149 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 OTUD5Q96G74 571 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 FBXO3Q9UK99 471 aa18.65■□□□□ 0.58
CLN3-228ENST00000567804 SPDYE5A6NIY4 337 aa18.64■□□□□ 0.57
CLN3-228ENST00000567804 CT47B1P0C2W7 299 aaPredicted RBP18.64■□□□□ 0.57
CLN3-228ENST00000567804 PRPF38BQ5VTL8 546 aaKnown RBP18.64■□□□□ 0.57
CLN3-228ENST00000567804 PTPN22Q9Y2R2 807 aa18.64■□□□□ 0.57
CLN3-228ENST00000567804 SNCAIPQ9Y6H5 919 aa18.64■□□□□ 0.57
CLN3-228ENST00000567804 CIAO1O76071 339 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 CAP1Q01518 475 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 TAF1CQ15572 869 aaPredicted RBP18.63■□□□□ 0.57
CLN3-228ENST00000567804 HOOK2Q96ED9 719 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 WRNIP1Q96S55 665 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 SIL1Q9H173 461 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 EFCC1Q9HA90 598 aa18.63■□□□□ 0.57
CLN3-228ENST00000567804 NOB1Q9ULX3 412 aaKnown RBP18.63■□□□□ 0.57
CLN3-228ENST00000567804 KIAA0100Q14667 2235 aaKnown RBP18.62■□□□□ 0.57
CLN3-228ENST00000567804 ATP2B3Q16720 1220 aa18.62■□□□□ 0.57
CLN3-228ENST00000567804 INTS3Q68E01 1043 aaKnown RBP18.62■□□□□ 0.57
CLN3-228ENST00000567804 ERO1BQ86YB8 467 aa18.62■□□□□ 0.57
CLN3-228ENST00000567804 FAM43AQ8N2R8 423 aa18.62■□□□□ 0.57
CLN3-228ENST00000567804 ZFYVE28Q9HCC9 887 aa18.62■□□□□ 0.57
CLN3-228ENST00000567804 DAGLAQ9Y4D2 1042 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms