RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CEP85Q6P2H3 762 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 RPAP2Q8IXW5 612 aaPredicted RBP16.52■□□□□ 0.24
CLK3-218ENST00000566926 ZGPATQ8N5A5 531 aaKnown RBP16.52■□□□□ 0.24
CLK3-218ENST00000566926 XAGE2Q96GT9 111 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 GPR108Q9NPR9 543 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 NOP58Q9Y2X3 529 aaKnown RBP16.52■□□□□ 0.24
CLK3-218ENST00000566926 COL1A1P02452 1464 aaPredicted RBP16.52■□□□□ 0.23
CLK3-218ENST00000566926 HMMRO75330 724 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 PHKA1P46020 1223 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 CRKP46108 304 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 HSP90AB4PQ58FF6 505 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 TEKT1Q969V4 418 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 PRMT6Q96LA8 375 aaPredicted RBP16.51■□□□□ 0.23
CLK3-218ENST00000566926 PPP2R3BQ9Y5P8 575 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 MYH2Q9UKX2 1941 aa16.51■□□□□ 0.23
CLK3-218ENST00000566926 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
CLK3-218ENST00000566926 ADORA1P30542 326 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 HUNKP57058 714 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 TNFAIP1Q13829 316 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 ERC1Q8IUD2 1116 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 PAPPA2Q9BXP8 1791 aa16.5■□□□□ 0.23
CLK3-218ENST00000566926 PDS5AQ29RF7 1337 aaKnown RBP16.49■□□□□ 0.23
CLK3-218ENST00000566926 SALL1Q9NSC2 1324 aa16.49■□□□□ 0.23
CLK3-218ENST00000566926 DLK2Q6UY11 383 aa16.49■□□□□ 0.23
CLK3-218ENST00000566926 CAPNS2Q96L46 248 aa16.49■□□□□ 0.23
CLK3-218ENST00000566926 LDHBP07195 334 aaKnown RBP16.48■□□□□ 0.23
CLK3-218ENST00000566926 UQCRFS1P1P0C7P4 283 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 SPTY2D1Q68D10 685 aaPredicted RBP16.48■□□□□ 0.23
CLK3-218ENST00000566926 CYP4F22Q6NT55 531 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 HHIPL2Q6UWX4 724 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 ZDHHC15Q96MV8 337 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 DEFB129Q9H1M3 183 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 VEZTQ9HBM0 779 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 AK9Q5TCS8 1911 aa16.48■□□□□ 0.23
CLK3-218ENST00000566926 CLRN2A0PK11 232 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 MAP2K2P36507 400 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 TNNI2P48788 182 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 MAP2K1Q02750 393 aaPredicted RBP16.47■□□□□ 0.23
CLK3-218ENST00000566926 SPDYE2Q495Y8 402 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 TNNI3KQ59H18 835 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 CCDC158Q5M9N0 1113 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 B4GALNT3Q6L9W6 998 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 RGMBQ6NW40 437 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 CENPQQ7L2Z9 268 aaPredicted RBP16.47■□□□□ 0.23
CLK3-218ENST00000566926 CCDC102AQ96A19 550 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 TMOD2Q9NZR1 351 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 ZNF70Q9UC06 446 aaPredicted RBP16.47■□□□□ 0.23
CLK3-218ENST00000566926 SCAF8Q9UPN6 1271 aaKnown RBP16.47■□□□□ 0.23
CLK3-218ENST00000566926 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 FPGT-TNNI3KV9GXZ4 949 aa16.47■□□□□ 0.23
CLK3-218ENST00000566926 GRM1Q13255 1194 aa16.46■□□□□ 0.23
CLK3-218ENST00000566926 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
CLK3-218ENST00000566926 TTLL12Q14166 644 aaPredicted RBP16.46■□□□□ 0.23
CLK3-218ENST00000566926 GRIK5Q16478 980 aa16.46■□□□□ 0.23
CLK3-218ENST00000566926 SUPT20HL1Q3ZLR7 823 aa16.46■□□□□ 0.23
CLK3-218ENST00000566926 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
CLK3-218ENST00000566926 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
CLK3-218ENST00000566926 HSPA1AP0DMV8 641 aaKnown RBP16.45■□□□□ 0.22
CLK3-218ENST00000566926 HSPA1BP0DMV9 641 aaKnown RBP16.45■□□□□ 0.22
CLK3-218ENST00000566926 ARID4AP29374 1257 aaPredicted RBP16.45■□□□□ 0.22
CLK3-218ENST00000566926 NOGQ13253 232 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 PRAMEF18Q5VWM3 479 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 ARMC9Q7Z3E5 817 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 AIDAQ96BJ3 306 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 RWDD1Q9H446 243 aaPredicted RBP16.45■□□□□ 0.22
CLK3-218ENST00000566926 ABCF2Q9UG63 623 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.45■□□□□ 0.22
CLK3-218ENST00000566926 AKAP11Q9UKA4 1901 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 THSD7BQ9C0I4 1608 aa16.45■□□□□ 0.22
CLK3-218ENST00000566926 PPP1R12BO60237 982 aaPredicted RBP16.44■□□□□ 0.22
CLK3-218ENST00000566926 PRDX5P30044 214 aa16.44■□□□□ 0.22
CLK3-218ENST00000566926 ZNF157P51786 506 aaPredicted RBP16.44■□□□□ 0.22
CLK3-218ENST00000566926 TTC39AQ5SRH9 613 aa16.44■□□□□ 0.22
CLK3-218ENST00000566926 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
CLK3-218ENST00000566926 BEGAINQ9BUH8 593 aa16.44■□□□□ 0.22
CLK3-218ENST00000566926 EXOC6BQ9Y2D4 811 aa16.44■□□□□ 0.22
CLK3-218ENST00000566926 RAB11FIP3O75154 756 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 HDAC1Q13547 482 aaPredicted RBP16.43■□□□□ 0.22
CLK3-218ENST00000566926 RASA3Q14644 834 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 FKBP1CQ5VVH2 108 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 DZIP1Q86YF9 867 aaKnown RBP16.43■□□□□ 0.22
CLK3-218ENST00000566926 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 PCNTO95613 3336 aa16.43■□□□□ 0.22
CLK3-218ENST00000566926 UNCXA6NJT0 531 aa16.42■□□□□ 0.22
CLK3-218ENST00000566926 APOBEC3HQ6NTF7 200 aaKnown RBP16.42■□□□□ 0.22
CLK3-218ENST00000566926 KIF1BPQ96EK5 621 aa16.42■□□□□ 0.22
CLK3-218ENST00000566926 ZNF512BQ96KM6 892 aaPredicted RBP16.42■□□□□ 0.22
CLK3-218ENST00000566926 DBNDD2Q9BQY9 259 aa16.42■□□□□ 0.22
CLK3-218ENST00000566926 WBP1LQ9NX94 342 aa16.42■□□□□ 0.22
CLK3-218ENST00000566926 TCP10L2B9ZVM9 353 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 IGSF3O75054 1194 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 LDHCP07864 332 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 GSTO1P78417 241 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 FAM83AQ86UY5 434 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 REM2Q8IYK8 340 aaPredicted RBP16.41■□□□□ 0.22
CLK3-218ENST00000566926 CLASRPQ8N2M8 674 aaKnown RBP16.41■□□□□ 0.22
CLK3-218ENST00000566926 RHPN1Q8TCX5 695 aa16.41■□□□□ 0.22
CLK3-218ENST00000566926 HOOK2Q96ED9 719 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms