RNA–Protein interactions for RNA: ENST00000565003.5

CMTM3-209, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-209ENST00000565003 LPIN2Q92539 896 aa12.52□□□□□ -0.41
CMTM3-209ENST00000565003 TDRD3Q9H7E2 651 aaKnown RBP12.52□□□□□ -0.41
CMTM3-209ENST00000565003 ZNF70Q9UC06 446 aaPredicted RBP12.52□□□□□ -0.41
CMTM3-209ENST00000565003 FBXO3Q9UK99 471 aa12.52□□□□□ -0.41
CMTM3-209ENST00000565003 MAP3K11Q16584 847 aa12.51□□□□□ -0.41
CMTM3-209ENST00000565003 ATF7IPQ6VMQ6 1270 aa12.51□□□□□ -0.41
CMTM3-209ENST00000565003 CDAN1Q8IWY9 1227 aa12.51□□□□□ -0.41
CMTM3-209ENST00000565003 FRAT1Q92837 279 aaPredicted RBP12.51□□□□□ -0.41
CMTM3-209ENST00000565003 IPO8O15397 1037 aaKnown RBP12.5□□□□□ -0.41
CMTM3-209ENST00000565003 IL15P40933 162 aaPredicted RBP12.5□□□□□ -0.41
CMTM3-209ENST00000565003 TNFAIP1Q13829 316 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 ATP2B3Q16720 1220 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 REM2Q8IYK8 340 aaPredicted RBP12.5□□□□□ -0.41
CMTM3-209ENST00000565003 CLUAP1Q96AJ1 413 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 CLMNQ96JQ2 1002 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 COPRSQ9NQ92 184 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 HDAC5Q9UQL6 1122 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 MYH13Q9UKX3 1938 aa12.5□□□□□ -0.41
CMTM3-209ENST00000565003 TCP10L2B9ZVM9 353 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 GNAI3P08754 354 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 HDLBPQ00341 1268 aaKnown RBP12.49□□□□□ -0.41
CMTM3-209ENST00000565003 MTX1Q13505 466 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 SUPT20HL1Q3ZLR7 823 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 SPRYD7Q5W111 196 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 TEPSINQ96N21 525 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 MCOLN1Q9GZU1 580 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 CEP126Q9P2H0 1117 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 OTOFQ9HC10 1997 aa12.49□□□□□ -0.41
CMTM3-209ENST00000565003 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 PPP1R12BO60237 982 aaPredicted RBP12.48□□□□□ -0.41
CMTM3-209ENST00000565003 USP2O75604 605 aaPredicted RBP12.48□□□□□ -0.41
CMTM3-209ENST00000565003 ADORA1P30542 326 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 PHKA1P46020 1223 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 TM4SF4P48230 202 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 CACNB3P54284 484 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 DGKZQ13574 1117 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 APOBEC3HQ6NTF7 200 aaKnown RBP12.48□□□□□ -0.41
CMTM3-209ENST00000565003 TEKT1Q969V4 418 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 ZDHHC15Q96MV8 337 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 TMEM39BQ9GZU3 492 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.48□□□□□ -0.41
CMTM3-209ENST00000565003 SUGT1Q9Y2Z0 365 aa12.48□□□□□ -0.41
CMTM3-209ENST00000565003 MAST3O60307 1309 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 TBC1D8O95759 1140 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 PRDX5P30044 214 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 ZKSCAN2Q63HK3 967 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 TMEM57Q8N5G2 664 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 WDR66Q8TBY9 1149 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 SLC10A4Q96EP9 437 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 MRIQ9BWK5 157 aa12.47□□□□□ -0.41
CMTM3-209ENST00000565003 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.47□□□□□ -0.41
CMTM3-209ENST00000565003 LAMB1P07942 1786 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 PNMA6EA0A0J9YXQ4 647 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 ZBTB48P10074 688 aaPredicted RBP12.46□□□□□ -0.41
CMTM3-209ENST00000565003 IREB2P48200 963 aaKnown RBP12.46□□□□□ -0.41
CMTM3-209ENST00000565003 SREBF2Q12772 1141 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 TFCP2Q12800 502 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 CCDC102BQ68D86 513 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 HHIPL2Q6UWX4 724 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 WNK4Q96J92 1243 aa12.46□□□□□ -0.41
CMTM3-209ENST00000565003 ZBED9Q6R2W3 1325 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 UNCXA6NJT0 531 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 GNAI2P04899 355 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 GJA5P36382 358 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 TNNI2P48788 182 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 TIMM10P62072 90 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 DIXDC1Q155Q3 683 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 ANKRD13AQ8IZ07 590 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 GNL3LQ9NVN8 582 aaKnown RBP12.45□□□□□ -0.42
CMTM3-209ENST00000565003 DAGLAQ9Y4D2 1042 aa12.45□□□□□ -0.42
CMTM3-209ENST00000565003 SALL1Q9NSC2 1324 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 A0A1B0GUL7 405 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 MANSC4A6NHS7 340 aaPredicted RBP12.44□□□□□ -0.42
CMTM3-209ENST00000565003 CCDC85CA6NKD9 419 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 SEMA3EO15041 775 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 RASGRF1Q13972 1273 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.44□□□□□ -0.42
CMTM3-209ENST00000565003 ZNF296Q8WUU4 475 aaPredicted RBP12.44□□□□□ -0.42
CMTM3-209ENST00000565003 R3HDMLQ9H3Y0 253 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 TMOD2Q9NZR1 351 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 DENND2AQ9ULE3 1009 aa12.44□□□□□ -0.42
CMTM3-209ENST00000565003 IGF2BP3O00425 579 aaKnown RBP eCLIP12.43□□□□□ -0.42
CMTM3-209ENST00000565003 ZBTB22O15209 634 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 LDHBP07195 334 aaKnown RBP12.43□□□□□ -0.42
CMTM3-209ENST00000565003 RLBP1P12271 317 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 VGLL4Q14135 290 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 FKBP1CQ5VVH2 108 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 FAM83AQ86UY5 434 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 IFNL1Q8IU54 200 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.43□□□□□ -0.42
CMTM3-209ENST00000565003 CNKSR2Q8WXI2 1034 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 OPTNQ96CV9 577 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 XAGE2Q96GT9 111 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 CFHR5Q9BXR6 569 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 ELP3Q9H9T3 547 aa12.43□□□□□ -0.42
CMTM3-209ENST00000565003 RPAP1Q9BWH6 1393 aaPredicted RBP12.43□□□□□ -0.42
CMTM3-209ENST00000565003 GPR25O00155 361 aa12.42□□□□□ -0.42
CMTM3-209ENST00000565003 MAP3K9P80192 1104 aa12.42□□□□□ -0.42
CMTM3-209ENST00000565003 NFIAQ12857 509 aa12.42□□□□□ -0.42
CMTM3-209ENST00000565003 CDC42EP5Q6NZY7 148 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms