RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 RTCBQ9Y3I0 505 aaKnown RBP8.21□□□□□ -1.1
VPS35-204ENST00000563884 CCDC141Q6ZP82 1450 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 GPLD1P80108 840 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 HFE2Q6ZVN8 426 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 CMTR1Q8N1G2 835 aaKnown RBP8.2□□□□□ -1.1
VPS35-204ENST00000563884 TP53INP1Q96A56 240 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 CCDC97Q96F63 343 aaPredicted RBP8.2□□□□□ -1.1
VPS35-204ENST00000563884 ZMIZ1Q9ULJ6 1067 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 NOVA2Q9UNW9 492 aaKnown RBP8.2□□□□□ -1.1
VPS35-204ENST00000563884 COL22A1Q8NFW1 1626 aaPredicted RBP8.2□□□□□ -1.1
VPS35-204ENST00000563884 PNPLA6Q8IY17 1366 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 CCNB3Q8WWL7 1395 aa8.2□□□□□ -1.1
VPS35-204ENST00000563884 ARHGAP35Q9NRY4 1499 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 ADGRB3O60242 1522 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.19□□□□□ -1.1
VPS35-204ENST00000563884 OPLAHO14841 1288 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 H2AFB1P0C5Y9 115 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 H2AFB2P0C5Z0 115 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 EIF2AK2P19525 551 aaKnown RBP8.19□□□□□ -1.1
VPS35-204ENST00000563884 PLAURQ03405 335 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 GRIK5Q16478 980 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 FOXD4L6Q3SYB3 417 aaPredicted RBP8.19□□□□□ -1.1
VPS35-204ENST00000563884 FOXD4L3Q6VB84 417 aaPredicted RBP8.19□□□□□ -1.1
VPS35-204ENST00000563884 TREML1Q86YW5 311 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 RGL4Q8IZJ4 473 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 DTWD1Q8N5C7 304 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 PBXIP1Q96AQ6 731 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 SMG9Q9H0W8 520 aaKnown RBP8.19□□□□□ -1.1
VPS35-204ENST00000563884 LRFN2Q9ULH4 789 aa8.19□□□□□ -1.1
VPS35-204ENST00000563884 LAMC1P11047 1609 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 MYO5BQ9ULV0 1848 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 XYLBO75191 536 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 SWI5Q1ZZU3 235 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 ERICH6Q7L0X2 663 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 FBXO11Q86XK2 927 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 PRIMPOLQ96LW4 560 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 ACIN1Q9UKV3 1341 aaKnown RBP8.18□□□□□ -1.1
VPS35-204ENST00000563884 CASKIN1Q8WXD9 1431 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 FYCO1Q9BQS8 1478 aa8.18□□□□□ -1.1
VPS35-204ENST00000563884 NALCNQ8IZF0 1738 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 NRLP54845 237 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 C1QTNF8P60827 252 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 FKBP5Q13451 457 aaPredicted RBP8.17□□□□□ -1.1
VPS35-204ENST00000563884 BRINP3Q76B58 766 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 DEFB132Q7Z7B7 95 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 TTC9Q92623 222 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 SLC26A8Q96RN1 970 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 C19orf44Q9H6X5 657 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 TLR7Q9NYK1 1049 aaKnown RBP8.17□□□□□ -1.1
VPS35-204ENST00000563884 NINLQ9Y2I6 1382 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 ARHGAP31Q2M1Z3 1444 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 RPRD2Q5VT52 1461 aaKnown RBP8.17□□□□□ -1.1
VPS35-204ENST00000563884 MBD5Q9P267 1494 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 ADGRB2O60241 1585 aa8.17□□□□□ -1.1
VPS35-204ENST00000563884 PRMT3O60678 531 aa8.16□□□□□ -1.1
VPS35-204ENST00000563884 COX20Q5RI15 118 aa8.16□□□□□ -1.1
VPS35-204ENST00000563884 PTPN23Q9H3S7 1636 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 ARHGEF5Q12774 1597 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 EHBP1L1Q8N3D4 1523 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 RALGAPBQ86X10 1494 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 J3QW42 95 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 EGFRP00533 1210 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 PSAPP07602 524 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 IREB2P48200 963 aaKnown RBP8.15□□□□□ -1.1
VPS35-204ENST00000563884 CCDC82Q8N4S0 544 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 STK32AQ8WU08 396 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 WFDC12Q8WWY7 111 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 ZFP64Q9NPA5 681 aa8.15□□□□□ -1.1
VPS35-204ENST00000563884 GCC2Q8IWJ2 1684 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 CAMTA1Q9Y6Y1 1673 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 PIK3R4Q99570 1358 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 LOC102724428A0A0B4J2F2 783 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 GHRHP01286 108 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 SIK1P57059 783 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 OCLNQ16625 522 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 PLD4Q96BZ4 506 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 NSUN5Q96P11 429 aaKnown RBP8.14□□□□□ -1.11
VPS35-204ENST00000563884 TNS1Q9HBL0 1735 aaKnown RBP8.14□□□□□ -1.11
VPS35-204ENST00000563884 GLI3P10071 1580 aa8.14□□□□□ -1.11
VPS35-204ENST00000563884 TRPM2O94759 1503 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 PLEKHG1Q9ULL1 1385 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 MMP20O60882 483 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 ARTNQ5T4W7 220 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 GDF6Q6KF10 455 aaPredicted RBP8.13□□□□□ -1.11
VPS35-204ENST00000563884 IGF2-ASQ6U949 168 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 SSBP4Q9BWG4 385 aaPredicted RBP8.13□□□□□ -1.11
VPS35-204ENST00000563884 RBSNQ9H1K0 784 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 PPP1R1BQ9UD71 204 aaPredicted RBP8.13□□□□□ -1.11
VPS35-204ENST00000563884 CEP350Q5VT06 3117 aa8.13□□□□□ -1.11
VPS35-204ENST00000563884 NWD2Q9ULI1 1742 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 PPP1R15AO75807 674 aaPredicted RBP8.12□□□□□ -1.11
VPS35-204ENST00000563884 BRD2P25440 801 aaKnown RBP8.12□□□□□ -1.11
VPS35-204ENST00000563884 NOS3P29474 1203 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 TMEM164Q5U3C3 297 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 NBPF11Q86T75 865 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 SAP130Q9H0E3 1048 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 KCNMB2Q9Y691 235 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 MST1RQ04912 1400 aa8.12□□□□□ -1.11
VPS35-204ENST00000563884 DEAF1O75398 565 aaPredicted RBP8.11□□□□□ -1.11
VPS35-204ENST00000563884 C16orf46Q6P387 395 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms