RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 GRIK5Q16478 980 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 ADGRA1Q86SQ6 560 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 TBC1D22AQ8WUA7 517 aa16.29■□□□□ 0.2
VPS39-206ENST00000562662 FOXP2O15409 715 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 PPIP5K2O43314 1243 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 LDHBP07195 334 aaKnown RBP16.28■□□□□ 0.2
VPS39-206ENST00000562662 CYP7A1P22680 504 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 GTF2IP78347 998 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 VPS53Q5VIR6 699 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 NAA16Q6N069 864 aaPredicted RBP16.28■□□□□ 0.2
VPS39-206ENST00000562662 TMED8Q6PL24 325 aaPredicted RBP16.28■□□□□ 0.2
VPS39-206ENST00000562662 IL17RAQ96F46 866 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 DSCC1Q9BVC3 393 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 FHDC1Q9C0D6 1143 aaPredicted RBP16.28■□□□□ 0.2
VPS39-206ENST00000562662 VPS33BQ9H267 617 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 PALD1Q9ULE6 856 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 BCS1LQ9Y276 419 aa16.28■□□□□ 0.2
VPS39-206ENST00000562662 RBM8AQ9Y5S9 174 aaKnown RBP16.28■□□□□ 0.2
VPS39-206ENST00000562662 DICER1Q9UPY3 1922 aaKnown RBP16.27■□□□□ 0.2
VPS39-206ENST00000562662 G3V3G9 751 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 HSPD1P10809 573 aaKnown RBP16.27■□□□□ 0.2
VPS39-206ENST00000562662 ANP32AP39687 249 aaKnown RBP16.27■□□□□ 0.2
VPS39-206ENST00000562662 NECTIN1Q15223 517 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 MFSD14BQ5SR56 506 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 DCAF8Q5TAQ9 597 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 KCNB2Q92953 911 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 ZNF277Q9NRM2 450 aaPredicted RBP16.27■□□□□ 0.2
VPS39-206ENST00000562662 ADAMTSL1Q8N6G6 1762 aa16.27■□□□□ 0.2
VPS39-206ENST00000562662 BAZ2AQ9UIF9 1905 aaKnown RBP16.26■□□□□ 0.19
VPS39-206ENST00000562662 NFKBIEO00221 500 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 MBD4O95243 580 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 ANAPC15P60006 121 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 TTLL5Q6EMB2 1281 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 CERS5Q8N5B7 392 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 AIDAQ96BJ3 306 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 STRBPQ96SI9 672 aaKnown RBP16.26■□□□□ 0.19
VPS39-206ENST00000562662 KCNQ5Q9NR82 932 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 SBF1O95248 1867 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 FOCADQ5VW36 1801 aa16.26■□□□□ 0.19
VPS39-206ENST00000562662 LTBP3Q9NS15 1303 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 ECM29Q5VYK3 1845 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 YDJCA8MPS7 323 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 IARSP41252 1262 aaKnown RBP16.25■□□□□ 0.19
VPS39-206ENST00000562662 FKBP1AP62942 108 aaKnown RBP16.25■□□□□ 0.19
VPS39-206ENST00000562662 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 DZIP1Q86YF9 867 aaKnown RBP16.25■□□□□ 0.19
VPS39-206ENST00000562662 RASEFQ8IZ41 740 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 LCORLQ8N3X6 602 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 MIGA1Q8NAN2 632 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 RIOK1Q9BRS2 568 aaKnown RBP16.25■□□□□ 0.19
VPS39-206ENST00000562662 TAOK3Q9H2K8 898 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 ARMT1Q9H993 441 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 SUGT1Q9Y2Z0 365 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 SNX14Q9Y5W7 946 aa16.25■□□□□ 0.19
VPS39-206ENST00000562662 U3KPZ7 1027 aaPredicted RBP16.25■□□□□ 0.19
VPS39-206ENST00000562662 LAMB1P07942 1786 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 MAGEB6P1A0A0J9YX57 407 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 SLC27A2O14975 620 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 DACT2Q5SW24 774 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 STRIP1Q5VSL9 837 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 LARGE2Q8N3Y3 721 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 FBXW7Q969H0 707 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 MXD3Q9BW11 206 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 NAV1Q8NEY1 1877 aa16.24■□□□□ 0.19
VPS39-206ENST00000562662 USP17L3A6NCW0 530 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 USP17L4A6NCW7 530 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 DYNLL1P63167 89 aaKnown RBP16.23■□□□□ 0.19
VPS39-206ENST00000562662 GSTO1P78417 241 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 DIXDC1Q155Q3 683 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 USP17L1Q7RTZ2 530 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 SYT17Q9BSW7 474 aa16.23■□□□□ 0.19
VPS39-206ENST00000562662 MROH7-TTC4A0A0A0MT08 1334 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 ZMYM6O95789 1325 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 GNAT2P19087 354 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 RASSF7Q02833 373 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 RABEP1Q15276 862 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 EPB41L4AQ9HCS5 686 aaPredicted RBP16.22■□□□□ 0.19
VPS39-206ENST00000562662 TIAM2Q8IVF5 1701 aa16.22■□□□□ 0.19
VPS39-206ENST00000562662 GAKO14976 1311 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 GSG1L2A8MUP6 293 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 PATL2C9JE40 543 aaKnown RBP16.21■□□□□ 0.19
VPS39-206ENST00000562662 PRKAB2O43741 272 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 FGAP02671 866 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 LDHCP07864 332 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 CYP21A2P08686 494 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 ALX1Q15699 326 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 TSGA10IPQ3SY00 556 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 RNF20Q5VTR2 975 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 FAM163AQ96GL9 167 aaPredicted RBP16.21■□□□□ 0.19
VPS39-206ENST00000562662 AATFQ9NY61 560 aaKnown RBP eCLIP16.21■□□□□ 0.19
VPS39-206ENST00000562662 TAF6LQ9Y6J9 622 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 SLC4A4Q9Y6R1 1079 aa16.21■□□□□ 0.19
VPS39-206ENST00000562662 DDX60LQ5H9U9 1706 aaKnown RBP16.21■□□□□ 0.19
VPS39-206ENST00000562662 RPAP1Q9BWH6 1393 aaPredicted RBP16.21■□□□□ 0.19
VPS39-206ENST00000562662 MYH1P12882 1939 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 PRELPP51888 382 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 PPP4CP60510 307 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 NIM1KQ8IY84 436 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 IFNL3Q8IZI9 196 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 DDRGK1Q96HY6 314 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms