RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 MNS1Q8NEH6 495 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 UBXN4Q92575 508 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 IKBKBO14920 756 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 CABP4P57796 275 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 KIF23Q02241 960 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 GNL2Q13823 731 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 HSP90AB3PQ58FF7 597 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 TTC39AQ5SRH9 613 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 TICAM2Q86XR7 235 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 FBXL16Q8N461 479 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 HPS5Q9UPZ3 1129 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 SLIT3O75094 1523 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 CBFA2T2O43439 604 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 WDHD1O75717 1129 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 FGAP02671 866 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 NCOA7Q8NI08 942 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 NOL10Q9BSC4 688 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 URI1O94763 535 aaPredicted RBP16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 CCDC158Q5M9N0 1113 aa16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 DCAF5Q96JK2 942 aa16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 PUS3Q9BZE2 481 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 ARGLU1Q9NWB6 273 aaPredicted RBP16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 CEP126Q9P2H0 1117 aa16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 MROH7-TTC4A0A0A0MT08 1334 aa16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 ADAMTS7Q9UKP4 1686 aa16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 UTP14AQ9BVJ6 771 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-202ENST00000561976 MYL5Q02045 173 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 SLC39A14Q15043 492 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 MB21D2Q8IYB1 491 aaPredicted RBP16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 DPF2Q92785 391 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 PHLPP2Q6ZVD8 1323 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 ZNF213O14771 459 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 TTLL7Q6ZT98 887 aa16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 FAM177A1Q8N128 213 aaPredicted RBP16.13■□□□□ 0.17
VPS9D1-202ENST00000561976 TOP1P11387 765 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 GOLGA8FQ08AF8 430 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 GOLGA8DPQ0D2H9 430 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 PTPN21Q16825 1174 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 TMCO3Q6UWJ1 677 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 OLFM4Q6UX06 510 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 ALG1Q9BT22 464 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 FHOD1Q9Y613 1164 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 LMTK3Q96Q04 1460 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 FER1L4A9Z1Z3 1794 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 SCN11AQ9UI33 1791 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 ANTXR2P58335 489 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 PNOCQ13519 176 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 JMYQ8N9B5 988 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 AIFM3Q96NN9 605 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 ZBTB3Q9H5J0 574 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 ARFGEF2Q9Y6D5 1785 aa16.12■□□□□ 0.17
VPS9D1-202ENST00000561976 CYP27B1O15528 508 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 ZFYP08048 801 aaPredicted RBP16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 PNMA6AP0CW24 399 aaPredicted RBP16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 TIGD1Q96MW7 591 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 HSD3B7Q9H2F3 369 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 CAMTA1Q9Y6Y1 1673 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 RGPD5Q99666 1765 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 FOXP2O15409 715 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 ADORA1P30542 326 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 TRDNQ13061 729 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 CARD6Q9BX69 1037 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 TUBE1Q9UJT0 475 aa16.11■□□□□ 0.17
VPS9D1-202ENST00000561976 NBPF26B4DH59 902 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 NBPF14Q5TI25 921 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 NBPF10Q6P3W6 841 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 VPS37DQ86XT2 251 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 NBPF15Q8N660 670 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 PUS7LQ9H0K6 701 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 ZSCAN12O43309 604 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 RXRAP19793 462 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 TRIM65Q6PJ69 517 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 XAGE2Q96GT9 111 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 SRRTQ9BXP5 876 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 MEGF6O75095 1541 aa16.1■□□□□ 0.17
VPS9D1-202ENST00000561976 TMEM232C9JQI7 657 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CIAO1O76071 339 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CCDC57Q2TAC2 916 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 SHC4Q6S5L8 630 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 VSTM4Q8IW00 320 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 APPBP2Q92624 585 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CCDC85AQ96PX6 553 aaPredicted RBP16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 FANCLQ9NW38 375 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 ZAP70P43403 619 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 METAP2P50579 478 aaKnown RBP eCLIP16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 HSP90AA4PQ58FG1 418 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 KRT40Q6A162 431 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 PDILTQ8N807 584 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CLIC6Q96NY7 704 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 GPAA1O43292 621 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CPLX2Q6PUV4 134 aaKnown RBP16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 REXO1L1PQ8IX06 675 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 CNNM3Q8NE01 707 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 AKAP2Q9Y2D5 859 aa16.09■□□□□ 0.17
VPS9D1-202ENST00000561976 PPP6R2O75170 966 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 PLA2G4AP47712 749 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 FAM193AP78312 1265 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms