RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 SPATA5Q8NB90 893 aa28.69■■■□□ 2.18
SMPD3-202ENST00000561749 ZBED3Q96IU2 234 aaPredicted RBP28.69■■■□□ 2.18
SMPD3-202ENST00000561749 LRRCC1Q9C099 1032 aa28.69■■■□□ 2.18
SMPD3-202ENST00000561749 MYH2Q9UKX2 1941 aa28.69■■■□□ 2.18
SMPD3-202ENST00000561749 AOX1Q06278 1338 aa28.69■■■□□ 2.18
SMPD3-202ENST00000561749 CRKP46108 304 aa28.68■■■□□ 2.18
SMPD3-202ENST00000561749 HTRA3P83110 453 aa28.68■■■□□ 2.18
SMPD3-202ENST00000561749 CDC37L1Q7L3B6 337 aa28.68■■■□□ 2.18
SMPD3-202ENST00000561749 ABCF2Q9UG63 623 aa28.68■■■□□ 2.18
SMPD3-202ENST00000561749 PDS5AQ29RF7 1337 aaKnown RBP28.68■■■□□ 2.18
SMPD3-202ENST00000561749 SALL1Q9NSC2 1324 aa28.68■■■□□ 2.18
SMPD3-202ENST00000561749 ZBTB22O15209 634 aa28.67■■■□□ 2.18
SMPD3-202ENST00000561749 LDHBP07195 334 aaKnown RBP28.67■■■□□ 2.18
SMPD3-202ENST00000561749 IFIT2P09913 472 aaKnown RBP28.67■■■□□ 2.18
SMPD3-202ENST00000561749 APLP1P51693 650 aa28.67■■■□□ 2.18
SMPD3-202ENST00000561749 PRMT6Q96LA8 375 aaPredicted RBP28.67■■■□□ 2.18
SMPD3-202ENST00000561749 SERPINA10Q9UK55 444 aa28.67■■■□□ 2.18
SMPD3-202ENST00000561749 SPDYE2BA6NHP3 402 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 SPDYE6P0CI01 402 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 AAMPQ13685 434 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 TBC1D9Q6ZT07 1266 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 MTMR14Q8NCE2 650 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 SUGT1Q9Y2Z0 365 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 MAST3O60307 1309 aa28.66■■■□□ 2.18
SMPD3-202ENST00000561749 CLRN2A0PK11 232 aa28.65■■■□□ 2.18
SMPD3-202ENST00000561749 SULF1Q8IWU6 871 aa28.65■■■□□ 2.18
SMPD3-202ENST00000561749 DIXDC1Q155Q3 683 aa28.64■■■□□ 2.18
SMPD3-202ENST00000561749 ZGPATQ8N5A5 531 aaKnown RBP28.64■■■□□ 2.18
SMPD3-202ENST00000561749 TEKT1Q969V4 418 aa28.64■■■□□ 2.18
SMPD3-202ENST00000561749 ZNF408Q9H9D4 720 aa28.64■■■□□ 2.18
SMPD3-202ENST00000561749 NDUFB9Q9Y6M9 179 aa28.63■■■□□ 2.17
SMPD3-202ENST00000561749 PITPNM2Q9BZ72 1349 aa28.63■■■□□ 2.17
SMPD3-202ENST00000561749 ZAP70P43403 619 aa28.62■■■□□ 2.17
SMPD3-202ENST00000561749 HDLBPQ00341 1268 aaKnown RBP28.62■■■□□ 2.17
SMPD3-202ENST00000561749 HDAC1Q13547 482 aaPredicted RBP28.62■■■□□ 2.17
SMPD3-202ENST00000561749 ZNF512BQ96KM6 892 aaPredicted RBP28.62■■■□□ 2.17
SMPD3-202ENST00000561749 TDRD3Q9H7E2 651 aaKnown RBP28.62■■■□□ 2.17
SMPD3-202ENST00000561749 MYO1BO43795 1136 aa28.61■■■□□ 2.17
SMPD3-202ENST00000561749 ERICH6Q7L0X2 663 aa28.61■■■□□ 2.17
SMPD3-202ENST00000561749 DZIP1Q86YF9 867 aaKnown RBP28.61■■■□□ 2.17
SMPD3-202ENST00000561749 VEZTQ9HBM0 779 aa28.61■■■□□ 2.17
SMPD3-202ENST00000561749 MAST2Q6P0Q8 1798 aa28.6■■■□□ 2.17
SMPD3-202ENST00000561749 SPTY2D1Q68D10 685 aaPredicted RBP28.6■■■□□ 2.17
SMPD3-202ENST00000561749 CELF2O95319 508 aaKnown RBP28.59■■■□□ 2.17
SMPD3-202ENST00000561749 PRAMEF18Q5VWM3 479 aa28.59■■■□□ 2.17
SMPD3-202ENST00000561749 HHIPL2Q6UWX4 724 aa28.59■■■□□ 2.17
SMPD3-202ENST00000561749 ZDHHC15Q96MV8 337 aa28.59■■■□□ 2.17
SMPD3-202ENST00000561749 RAI14Q9P0K7 980 aa28.59■■■□□ 2.17
SMPD3-202ENST00000561749 ZNF70Q9UC06 446 aaPredicted RBP28.59■■■□□ 2.17
SMPD3-202ENST00000561749 DAGLAQ9Y4D2 1042 aa28.59■■■□□ 2.17
SMPD3-202ENST00000561749 TMEM88BA6NKF7 163 aa28.58■■■□□ 2.17
SMPD3-202ENST00000561749 CYP2E1P05181 493 aaPredicted RBP28.58■■■□□ 2.17
SMPD3-202ENST00000561749 CST9Q5W186 159 aa28.58■■■□□ 2.17
SMPD3-202ENST00000561749 APOBEC3FQ8IUX4 373 aaKnown RBP28.58■■■□□ 2.17
SMPD3-202ENST00000561749 CDCA5Q96FF9 252 aa28.58■■■□□ 2.17
SMPD3-202ENST00000561749 MRIQ9BWK5 157 aa28.58■■■□□ 2.17
SMPD3-202ENST00000561749 LRP2BPQ9P2M1 347 aa28.58■■■□□ 2.17
SMPD3-202ENST00000561749 DOCK2Q92608 1830 aa28.57■■■□□ 2.16
SMPD3-202ENST00000561749 MECOMQ03112 1051 aa28.57■■■□□ 2.16
SMPD3-202ENST00000561749 SPDYE2Q495Y8 402 aa28.57■■■□□ 2.16
SMPD3-202ENST00000561749 APOBEC3HQ6NTF7 200 aaKnown RBP28.57■■■□□ 2.16
SMPD3-202ENST00000561749 RWDD1Q9H446 243 aaPredicted RBP28.57■■■□□ 2.16
SMPD3-202ENST00000561749 PIH1D3Q9NQM4 214 aaKnown RBP28.57■■■□□ 2.16
SMPD3-202ENST00000561749 IGHDP01880 384 aa28.56■■■□□ 2.16
SMPD3-202ENST00000561749 CREBZFQ9NS37 354 aa28.56■■■□□ 2.16
SMPD3-202ENST00000561749 CACNB3P54284 484 aa28.55■■■□□ 2.16
SMPD3-202ENST00000561749 ZNF384Q8TF68 577 aa28.55■■■□□ 2.16
SMPD3-202ENST00000561749 ANTXR1Q9H6X2 564 aa28.55■■■□□ 2.16
SMPD3-202ENST00000561749 TCP10L2B9ZVM9 353 aa28.54■■■□□ 2.16
SMPD3-202ENST00000561749 ANKRD45Q5TZF3 282 aa28.54■■■□□ 2.16
SMPD3-202ENST00000561749 GCC1Q96CN9 775 aa28.54■■■□□ 2.16
SMPD3-202ENST00000561749 DNAJC2Q99543 621 aaKnown RBP28.54■■■□□ 2.16
SMPD3-202ENST00000561749 NSUN4Q96CB9 384 aaKnown RBP28.53■■■□□ 2.16
SMPD3-202ENST00000561749 DEFB129Q9H1M3 183 aa28.53■■■□□ 2.16
SMPD3-202ENST00000561749 BOLA2Q9H3K6 86 aa28.53■■■□□ 2.16
SMPD3-202ENST00000561749 ABT1Q9ULW3 272 aaKnown RBP28.53■■■□□ 2.16
SMPD3-202ENST00000561749 TSHZ3Q63HK5 1081 aa28.52■■■□□ 2.16
SMPD3-202ENST00000561749 OTUD7AQ8TE49 926 aaPredicted RBP28.52■■■□□ 2.16
SMPD3-202ENST00000561749 ZBTB47Q9UFB7 747 aaPredicted RBP28.52■■■□□ 2.16
SMPD3-202ENST00000561749 MROH7-TTC4A0A0A0MT08 1334 aa28.51■■■□□ 2.15
SMPD3-202ENST00000561749 GAKO14976 1311 aa28.51■■■□□ 2.15
SMPD3-202ENST00000561749 SLF2Q8IX21 1173 aa28.51■■■□□ 2.15
SMPD3-202ENST00000561749 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.51■■■□□ 2.15
SMPD3-202ENST00000561749 EDC3Q96F86 508 aaKnown RBP28.51■■■□□ 2.15
SMPD3-202ENST00000561749 AK9Q5TCS8 1911 aa28.5■■■□□ 2.15
SMPD3-202ENST00000561749 IDH1O75874 414 aaKnown RBP28.5■■■□□ 2.15
SMPD3-202ENST00000561749 ATP5JP18859 108 aa28.5■■■□□ 2.15
SMPD3-202ENST00000561749 B4GALNT3Q6L9W6 998 aa28.5■■■□□ 2.15
SMPD3-202ENST00000561749 CDC42EP5Q6NZY7 148 aa28.5■■■□□ 2.15
SMPD3-202ENST00000561749 TMOD2Q9NZR1 351 aa28.5■■■□□ 2.15
SMPD3-202ENST00000561749 GOLIM4O00461 696 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 BTDP43251 543 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 GSTO1P78417 241 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 RASA3Q14644 834 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 ECHDC1Q9NTX5 307 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 USP40Q9NVE5 1235 aa28.49■■■□□ 2.15
SMPD3-202ENST00000561749 MKRN1Q9UHC7 482 aaKnown RBP28.49■■■□□ 2.15
SMPD3-202ENST00000561749 MYH7P12883 1935 aa28.48■■■□□ 2.15
SMPD3-202ENST00000561749 TNFAIP1Q13829 316 aa28.48■■■□□ 2.15
SMPD3-202ENST00000561749 NAA16Q6N069 864 aaPredicted RBP28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms