RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MIER1Q8N108 512 aa12.76□□□□□ -0.37
LDLR-214ENST00000560628 TBC1D22AQ8WUA7 517 aa12.76□□□□□ -0.37
LDLR-214ENST00000560628 LPIN2Q92539 896 aa12.76□□□□□ -0.37
LDLR-214ENST00000560628 CEP126Q9P2H0 1117 aa12.76□□□□□ -0.37
LDLR-214ENST00000560628 BCAR3O75815 825 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 CACNB3P54284 484 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 MAP3K11Q16584 847 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 FRAT1Q92837 279 aaPredicted RBP12.75□□□□□ -0.37
LDLR-214ENST00000560628 TMEM39BQ9GZU3 492 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 HDAC5Q9UQL6 1122 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 TNNQ9UQP3 1299 aa12.75□□□□□ -0.37
LDLR-214ENST00000560628 SSC5DA1L4H1 1573 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 COL1A1P02452 1464 aaPredicted RBP12.74□□□□□ -0.37
LDLR-214ENST00000560628 CIAO1O76071 339 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 IREB2P48200 963 aaKnown RBP12.74□□□□□ -0.37
LDLR-214ENST00000560628 HDLBPQ00341 1268 aaKnown RBP12.74□□□□□ -0.37
LDLR-214ENST00000560628 SREBF2Q12772 1141 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 TNFAIP1Q13829 316 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 ATP2B3Q16720 1220 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 INTS3Q68E01 1043 aaKnown RBP12.74□□□□□ -0.37
LDLR-214ENST00000560628 ARHGAP45Q92619 1136 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 TEKT1Q969V4 418 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 WNK4Q96J92 1243 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 TEPSINQ96N21 525 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 R3HDMLQ9H3Y0 253 aa12.74□□□□□ -0.37
LDLR-214ENST00000560628 KIF16BQ96L93 1317 aa12.73□□□□□ -0.37
LDLR-214ENST00000560628 AKAP11Q9UKA4 1901 aa12.73□□□□□ -0.37
LDLR-214ENST00000560628 IPO8O15397 1037 aaKnown RBP12.73□□□□□ -0.37
LDLR-214ENST00000560628 ZNF296Q8WUU4 475 aaPredicted RBP12.73□□□□□ -0.37
LDLR-214ENST00000560628 CLUAP1Q96AJ1 413 aa12.73□□□□□ -0.37
LDLR-214ENST00000560628 MANSC4A6NHS7 340 aaPredicted RBP12.72□□□□□ -0.37
LDLR-214ENST00000560628 GPR25O00155 361 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 GNAI3P08754 354 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 TRIM27P14373 513 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 ADORA1P30542 326 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 GJA5P36382 358 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 IL15P40933 162 aaPredicted RBP12.72□□□□□ -0.37
LDLR-214ENST00000560628 TNNI2P48788 182 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 HNRNPUQ00839 825 aaKnown RBP eCLIP12.72□□□□□ -0.37
LDLR-214ENST00000560628 DIEXFQ68CQ4 756 aaKnown RBP12.72□□□□□ -0.37
LDLR-214ENST00000560628 APOBEC3HQ6NTF7 200 aaKnown RBP12.72□□□□□ -0.37
LDLR-214ENST00000560628 CTU1Q7Z7A3 348 aaKnown RBP12.72□□□□□ -0.37
LDLR-214ENST00000560628 ANKRD13AQ8IZ07 590 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 WDR66Q8TBY9 1149 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 ZDHHC15Q96MV8 337 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 MRIQ9BWK5 157 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 ELP3Q9H9T3 547 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 COPRSQ9NQ92 184 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 FBXO3Q9UK99 471 aa12.72□□□□□ -0.37
LDLR-214ENST00000560628 SRGAP3O43295 1099 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 PHKA1P46020 1223 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 INHBEP58166 350 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 TIMM10P62072 90 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 ATF7IPQ6VMQ6 1270 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 IFNL1Q8IU54 200 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 GNL3LQ9NVN8 582 aaKnown RBP12.71□□□□□ -0.37
LDLR-214ENST00000560628 TMOD2Q9NZR1 351 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 SUGT1Q9Y2Z0 365 aa12.71□□□□□ -0.37
LDLR-214ENST00000560628 MAST3O60307 1309 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 UNCXA6NJT0 531 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 IGF2BP3O00425 579 aaKnown RBP eCLIP12.7□□□□□ -0.38
LDLR-214ENST00000560628 ZBTB48P10074 688 aaPredicted RBP12.7□□□□□ -0.38
LDLR-214ENST00000560628 MAP3K9P80192 1104 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 TFCP2Q12800 502 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 DIXDC1Q155Q3 683 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 HHIPL2Q6UWX4 724 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.7□□□□□ -0.38
LDLR-214ENST00000560628 CNKSR2Q8WXI2 1034 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 OPTNQ96CV9 577 aa12.7□□□□□ -0.38
LDLR-214ENST00000560628 FKTNO75072 461 aa12.69□□□□□ -0.38
LDLR-214ENST00000560628 ALDH1A1P00352 501 aa12.69□□□□□ -0.38
LDLR-214ENST00000560628 LDHBP07195 334 aaKnown RBP12.69□□□□□ -0.38
LDLR-214ENST00000560628 PRDX5P30044 214 aa12.69□□□□□ -0.38
LDLR-214ENST00000560628 CCDC102BQ68D86 513 aa12.69□□□□□ -0.38
LDLR-214ENST00000560628 DENND2AQ9ULE3 1009 aa12.69□□□□□ -0.38
LDLR-214ENST00000560628 ECM29Q5VYK3 1845 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 GNAI2P04899 355 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 RGS19P49795 217 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 TCP10Q12799 353 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 VGLL4Q14135 290 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 CDC42EP5Q6NZY7 148 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 MIGA2Q7L4E1 593 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 FAM83AQ86UY5 434 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 TMEM57Q8N5G2 664 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.68□□□□□ -0.382e-7■□□□□ 10.3
LDLR-214ENST00000560628 XAGE2Q96GT9 111 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 NEUROD6Q96NK8 337 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 PTPN18Q99952 460 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 DAGLAQ9Y4D2 1042 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 CSADQ9Y600 493 aa12.68□□□□□ -0.38
LDLR-214ENST00000560628 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.68□□□□□ -0.38
LDLR-214ENST00000560628 PNMA6EA0A0J9YXQ4 647 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 A0A1B0GUL7 405 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 SOX10P56693 466 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 MLLT1Q03111 559 aaPredicted RBP12.67□□□□□ -0.38
LDLR-214ENST00000560628 MTX1Q13505 466 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 NOM1Q5C9Z4 860 aaKnown RBP12.67□□□□□ -0.38
LDLR-214ENST00000560628 FKBP1CQ5VVH2 108 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 ZKSCAN2Q63HK3 967 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 OTUD7BQ6GQQ9 843 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms