RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 CNNM1Q9NRU3 951 aa22.66■■□□□ 1.22
TSPAN3-208ENST00000560514 CEP290O15078 2479 aa22.66■■□□□ 1.22
TSPAN3-208ENST00000560514 CCDC57Q2TAC2 916 aa22.65■■□□□ 1.22
TSPAN3-208ENST00000560514 LDHAL6AQ6ZMR3 332 aa22.65■■□□□ 1.22
TSPAN3-208ENST00000560514 FAM43AQ8N2R8 423 aa22.65■■□□□ 1.22
TSPAN3-208ENST00000560514 FAM205AQ6ZU69 1335 aa22.64■■□□□ 1.22
TSPAN3-208ENST00000560514 GNRH1P01148 92 aa22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 CETPP11597 493 aa22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 DZIP1LQ8IYY4 767 aaKnown RBP22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 DPF3Q92784 378 aa22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 TRIOBPQ9H2D6 2365 aa22.64■■□□□ 1.21
TSPAN3-208ENST00000560514 CACNA1FO60840 1977 aa22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 TLR2O60603 784 aa22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 PRMT2P55345 433 aa22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 LACTBP83111 547 aaPredicted RBP22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 TEPSINQ96N21 525 aa22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 TMEM39BQ9GZU3 492 aa22.63■■□□□ 1.21
TSPAN3-208ENST00000560514 HIBADHP31937 336 aaKnown RBP22.62■■□□□ 1.21
TSPAN3-208ENST00000560514 CRKP46108 304 aa22.62■■□□□ 1.21
TSPAN3-208ENST00000560514 FOXO4P98177 505 aa22.62■■□□□ 1.21
TSPAN3-208ENST00000560514 CHRDL2Q6WN34 429 aa22.62■■□□□ 1.21
TSPAN3-208ENST00000560514 ZCCHC17Q9NP64 241 aaKnown RBP22.62■■□□□ 1.21
TSPAN3-208ENST00000560514 LMBR1LQ6UX01 489 aa22.61■■□□□ 1.21
TSPAN3-208ENST00000560514 CDAN1Q8IWY9 1227 aa22.61■■□□□ 1.21
TSPAN3-208ENST00000560514 TDRD7Q8NHU6 1098 aaKnown RBP22.61■■□□□ 1.21
TSPAN3-208ENST00000560514 ARAP2Q8WZ64 1704 aa22.61■■□□□ 1.21
TSPAN3-208ENST00000560514 ARHGAP39Q9C0H5 1083 aa22.61■■□□□ 1.21
TSPAN3-208ENST00000560514 SPDYE5A6NIY4 337 aa22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 SNAPC2Q13487 334 aa22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 ERO1BQ86YB8 467 aa22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 HOOK2Q96ED9 719 aa22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 ZNF594Q96JF6 807 aaPredicted RBP22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 PRKRIP1Q9H875 184 aaPredicted RBP22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 TMOD2Q9NZR1 351 aa22.6■■□□□ 1.21
TSPAN3-208ENST00000560514 HOXD10P28358 340 aa22.59■■□□□ 1.21
TSPAN3-208ENST00000560514 GYG1P46976 350 aa22.59■■□□□ 1.21
TSPAN3-208ENST00000560514 UBE4AQ14139 1066 aa22.59■■□□□ 1.21
TSPAN3-208ENST00000560514 VPS37DQ86XT2 251 aa22.59■■□□□ 1.21
TSPAN3-208ENST00000560514 NKX2-3Q8TAU0 364 aa22.59■■□□□ 1.21
TSPAN3-208ENST00000560514 BTBD19C9JJ37 291 aa22.58■■□□□ 1.21
TSPAN3-208ENST00000560514 FRAT2O75474 233 aaPredicted RBP22.58■■□□□ 1.21
TSPAN3-208ENST00000560514 ECM2O94769 699 aaPredicted RBP22.58■■□□□ 1.21
TSPAN3-208ENST00000560514 WRNIP1Q96S55 665 aa22.58■■□□□ 1.21
TSPAN3-208ENST00000560514 ZSWIM8A7E2V4 1837 aa22.57■■□□□ 1.2
TSPAN3-208ENST00000560514 HTATIP2Q9BUP3 242 aa22.57■■□□□ 1.2
TSPAN3-208ENST00000560514 RAET1EQ8TD07 263 aa22.56■■□□□ 1.2
TSPAN3-208ENST00000560514 SNCAIPQ9Y6H5 919 aa22.56■■□□□ 1.2
TSPAN3-208ENST00000560514 IRF6O14896 467 aa22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 PPIL2Q13356 520 aa22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 TBC1D22AQ8WUA7 517 aa22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 TEKT1Q969V4 418 aa22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 FAM84BQ96KN1 310 aaPredicted RBP22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 RBM27Q9P2N5 1060 aaKnown RBP22.55■■□□□ 1.2
TSPAN3-208ENST00000560514 FMNL1O95466 1100 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 PSMC4P43686 418 aa22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 HDLBPQ00341 1268 aaKnown RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 CHAF1AQ13111 956 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 MTFR1Q15390 333 aa22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 CCDC27Q2M243 656 aa22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 DCAF15Q66K64 600 aa22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 WWC1Q8IX03 1113 aa22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 ZKSCAN4Q969J2 545 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 C9orf78Q9NZ63 289 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 BIN2Q9UBW5 565 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-208ENST00000560514 F6X3S4 739 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 GRM8O00222 908 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 GRK4P32298 578 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 CACNB3P54284 484 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 EPHA10Q5JZY3 1008 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 BEND3Q5T5X7 828 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 TRIM47Q96LD4 638 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 SRRDQ9UH36 339 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 CPA4Q9UI42 421 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 NR2E3Q9Y5X4 410 aa22.53■■□□□ 1.2
TSPAN3-208ENST00000560514 SZT2Q5T011 3432 aa22.52■■□□□ 1.2
TSPAN3-208ENST00000560514 CAVIN4Q5BKX8 364 aa22.52■■□□□ 1.2
TSPAN3-208ENST00000560514 IQSEC3Q9UPP2 1182 aaPredicted RBP22.52■■□□□ 1.2
TSPAN3-208ENST00000560514 IL16Q14005 1332 aa22.52■■□□□ 1.2
TSPAN3-208ENST00000560514 UBXN2AP68543 259 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 PPATQ06203 517 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 C17orf99Q6UX52 265 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 FAM83AQ86UY5 434 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 SHISA4Q96DD7 197 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 ZNF341Q9BYN7 854 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 RIPOR2Q9Y4F9 1068 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 MROH5Q6ZUA9 1318 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 MYPNQ86TC9 1320 aa22.51■■□□□ 1.19
TSPAN3-208ENST00000560514 GJB1P08034 283 aa22.5■■□□□ 1.19
TSPAN3-208ENST00000560514 GJA8P48165 433 aa22.5■■□□□ 1.19
TSPAN3-208ENST00000560514 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.5■■□□□ 1.19
TSPAN3-208ENST00000560514 RNF208Q9H0X6 261 aa22.5■■□□□ 1.19
TSPAN3-208ENST00000560514 MAST3O60307 1309 aa22.5■■□□□ 1.19
TSPAN3-208ENST00000560514 PDHXO00330 501 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 CCL5P13501 91 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 OSBPP22059 807 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 ANKRD23Q86SG2 305 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 SLC17A8Q8NDX2 589 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 ZDHHC15Q96MV8 337 aa22.49■■□□□ 1.19
TSPAN3-208ENST00000560514 AK9Q5TCS8 1911 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms