RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DZIP1Q86YF9 867 aaKnown RBP11.19□□□□□ -0.62
LDLR-210ENST00000559340 DNAJC5GQ8N7S2 189 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 PI4K2BQ8TCG2 481 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 RAI14Q9P0K7 980 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 TTF2Q9UNY4 1162 aaKnown RBP11.19□□□□□ -0.62
LDLR-210ENST00000559340 POLR2AP24928 1970 aaKnown RBP11.19□□□□□ -0.62
LDLR-210ENST00000559340 ZNF646O15015 1829 aaPredicted RBP11.19□□□□□ -0.62
LDLR-210ENST00000559340 ZNF541Q9H0D2 1346 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 HIP1O00291 1037 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 DDNO94850 711 aaPredicted RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 CYP2E1P05181 493 aaPredicted RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 ZFYP08048 801 aaPredicted RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 RGS3P49796 1198 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 GMPSP49915 693 aaPredicted RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 SCARF1Q14162 830 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 TTC22Q5TAA0 569 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 NOL10Q9BSC4 688 aaKnown RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 CNOT7Q9UIV1 285 aaKnown RBP11.18□□□□□ -0.62
LDLR-210ENST00000559340 JAG2Q9Y219 1238 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 CEP350Q5VT06 3117 aa11.18□□□□□ -0.62
LDLR-210ENST00000559340 IDH1O75874 414 aaKnown RBP11.17□□□□□ -0.62
LDLR-210ENST00000559340 NAA16Q6N069 864 aaPredicted RBP11.17□□□□□ -0.62
LDLR-210ENST00000559340 HHIPL2Q6UWX4 724 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 CERS3Q8IU89 383 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 KIAA0825Q8IV33 1275 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 KBTBD3Q8NAB2 608 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 TEKT1Q969V4 418 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 RILPL2Q969X0 211 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 L3MBTL3Q96JM7 780 aaPredicted RBP11.17□□□□□ -0.62
LDLR-210ENST00000559340 GMLQ99445 158 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 HACL1Q9UJ83 578 aa11.17□□□□□ -0.62
LDLR-210ENST00000559340 ECM29Q5VYK3 1845 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 MAST2Q6P0Q8 1798 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 WDR90Q96KV7 1748 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 F8W031 263 aaPredicted RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 BAG3O95817 575 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 MAP4K4O95819 1239 aaPredicted RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 VEGFAP15692 232 aaPredicted RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 RBM5P52756 815 aaKnown RBP eCLIP11.16□□□□□ -0.62
LDLR-210ENST00000559340 DLGAP5Q15398 846 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 TSHZ3Q63HK5 1081 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 PI16Q6UXB8 463 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 TBC1D9Q6ZT07 1266 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 CERS5Q8N5B7 392 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 FAM163AQ96GL9 167 aaPredicted RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 FSD1Q9BTV5 496 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 PIH1D3Q9NQM4 214 aaKnown RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 GPRC5DQ9NZD1 345 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 SERPINA10Q9UK55 444 aa11.16□□□□□ -0.62
LDLR-210ENST00000559340 ZBTB12Q9Y330 459 aaPredicted RBP11.16□□□□□ -0.62
LDLR-210ENST00000559340 COL1A1P02452 1464 aaPredicted RBP11.15□□□□□ -0.62
LDLR-210ENST00000559340 MYO1BO43795 1136 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 PLCG2P16885 1265 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 PRDX5P30044 214 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 ZNF280AP59817 542 aaPredicted RBP11.15□□□□□ -0.62
LDLR-210ENST00000559340 UBE3CQ15386 1083 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 BMP2KLQ5H9B9 411 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 SLC9C2Q5TAH2 1124 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 PNMA8AQ86V59 439 aaPredicted RBP11.15□□□□□ -0.62
LDLR-210ENST00000559340 MICALL2Q8IY33 904 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 MTMR14Q8NCE2 650 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 SMC1BQ8NDV3 1235 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 NSUN4Q96CB9 384 aaKnown RBP11.15□□□□□ -0.62
LDLR-210ENST00000559340 KLRG1Q96E93 195 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 MXD3Q9BW11 206 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 ANTXR1Q9H6X2 564 aa11.15□□□□□ -0.62
LDLR-210ENST00000559340 ADARB2Q9NS39 739 aaKnown RBP11.15□□□□□ -0.62
LDLR-210ENST00000559340 RNF113AO15541 343 aaKnown RBP11.14□□□□□ -0.63
LDLR-210ENST00000559340 EIF5BO60841 1220 aaKnown RBP11.14□□□□□ -0.63
LDLR-210ENST00000559340 CYP7A1P22680 504 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 CRKP46108 304 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 MECOMQ03112 1051 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 CFAP100Q494V2 611 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 CASC1Q6TDU7 716 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 USP50Q70EL3 339 aaPredicted RBP11.14□□□□□ -0.63
LDLR-210ENST00000559340 MAGEB6Q8N7X4 407 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 JMYQ8N9B5 988 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 RUFY2Q8WXA3 655 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 RRAGCQ9HB90 399 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 MYOZ2Q9NPC6 264 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 TMOD2Q9NZR1 351 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 NDUFB9Q9Y6M9 179 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 RFX7Q2KHR2 1363 aa11.14□□□□□ -0.63
LDLR-210ENST00000559340 PDE6AP16499 860 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 EPHX2P34913 555 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 ADD2P35612 726 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 SCNN1DP51172 638 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 MFAP1P55081 439 aaKnown RBP11.13□□□□□ -0.63
LDLR-210ENST00000559340 EDC3Q96F86 508 aaKnown RBP11.13□□□□□ -0.63
LDLR-210ENST00000559340 ZDHHC15Q96MV8 337 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 DIAPH3Q9NSV4 1193 aa11.13□□□□□ -0.63
LDLR-210ENST00000559340 MROH7-TTC4A0A0A0MT08 1334 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 GPR75-ASB3A0A0A6YYF3 556 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 SDSP20132 328 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 EPS15P42566 896 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 PPP4CP60510 307 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 KIF4BQ2VIQ3 1234 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 RBM26Q5T8P6 1007 aaKnown RBP11.12□□□□□ -0.63
LDLR-210ENST00000559340 ZC3H15Q8WU90 426 aaKnown RBP11.12□□□□□ -0.63
LDLR-210ENST00000559340 APPBP2Q92624 585 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms