RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 PARP10Q53GL7 1025 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 USP50Q70EL3 339 aaPredicted RBP12.7□□□□□ -0.38
SPG11-212ENST00000558790 PPP1R42Q7Z4L9 355 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 SPSB2Q99619 263 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 GPRC5DQ9NZD1 345 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
SPG11-212ENST00000558790 CA12O43570 354 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 ANXA1P04083 346 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 FXR1P51114 621 aaKnown RBP eCLIP12.69□□□□□ -0.38
SPG11-212ENST00000558790 NKX2-3Q8TAU0 364 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 PRDM9Q9NQV7 894 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 TSPYL4Q9UJ04 414 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 ATP6V0A2Q9Y487 856 aa12.69□□□□□ -0.38
SPG11-212ENST00000558790 SPEF2Q9C093 1822 aa12.68□□□□□ -0.38
SPG11-212ENST00000558790 CTDSPL2Q05D32 466 aa12.68□□□□□ -0.38
SPG11-212ENST00000558790 SAPCD2Q86UD0 394 aa12.68□□□□□ -0.38
SPG11-212ENST00000558790 NLRP3Q96P20 1036 aa12.68□□□□□ -0.38
SPG11-212ENST00000558790 UTP14AQ9BVJ6 771 aaKnown RBP12.68□□□□□ -0.38
SPG11-212ENST00000558790 SNRKQ9NRH2 765 aa12.68□□□□□ -0.38
SPG11-212ENST00000558790 ADARB2Q9NS39 739 aaKnown RBP12.68□□□□□ -0.38
SPG11-212ENST00000558790 USP17L8P0C7I0 530 aa12.67□□□□□ -0.38
SPG11-212ENST00000558790 EIF2S2P20042 333 aaKnown RBP12.67□□□□□ -0.38
SPG11-212ENST00000558790 GMPSP49915 693 aaPredicted RBP12.67□□□□□ -0.38
SPG11-212ENST00000558790 CXCL9Q07325 125 aa12.67□□□□□ -0.38
SPG11-212ENST00000558790 TMEM259Q4ZIN3 620 aa12.67□□□□□ -0.38
SPG11-212ENST00000558790 FAM160A2Q8N612 972 aaPredicted RBP12.67□□□□□ -0.38
SPG11-212ENST00000558790 RTFDC1Q9BY42 306 aaPredicted RBP12.67□□□□□ -0.38
SPG11-212ENST00000558790 ZNRF3Q9ULT6 936 aa12.67□□□□□ -0.38
SPG11-212ENST00000558790 TRIOBPQ9H2D6 2365 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 MYH3P11055 1940 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 CDHR2Q9BYE9 1310 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 CEP290O15078 2479 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 DLL1O00548 723 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 ADH1BP00325 375 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 SLC10A5Q5PT55 438 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 DPP8Q6V1X1 898 aaPredicted RBP12.66□□□□□ -0.38
SPG11-212ENST00000558790 HELBQ8NG08 1087 aaPredicted RBP12.66□□□□□ -0.38
SPG11-212ENST00000558790 GLIS2Q9BZE0 524 aaPredicted RBP12.66□□□□□ -0.38
SPG11-212ENST00000558790 TMX4Q9H1E5 349 aaPredicted RBP12.66□□□□□ -0.38
SPG11-212ENST00000558790 VPS33BQ9H267 617 aa12.66□□□□□ -0.38
SPG11-212ENST00000558790 RANBP2P49792 3224 aaKnown RBP12.66□□□□□ -0.38
SPG11-212ENST00000558790 CELF2O95319 508 aaKnown RBP12.65□□□□□ -0.38
SPG11-212ENST00000558790 HCLS1P14317 486 aaPredicted RBP12.65□□□□□ -0.38
SPG11-212ENST00000558790 KIAA2012Q0VF49 1180 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 MCM6Q14566 821 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 NLRP10Q86W26 655 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 SUPT20HQ8NEM7 779 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 TRPM4Q8TD43 1214 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 GCC1Q96CN9 775 aa12.65□□□□□ -0.38
SPG11-212ENST00000558790 ZNF646O15015 1829 aaPredicted RBP12.65□□□□□ -0.39
SPG11-212ENST00000558790 SHTN1A0MZ66 631 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 YDJCA8MPS7 323 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 RAD17O75943 681 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 SP8Q8IXZ3 490 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 MPNDQ8N594 471 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 XAGE3Q8WTP9 111 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 ZNF428Q96B54 188 aa12.64□□□□□ -0.39
SPG11-212ENST00000558790 SH3TC1Q8TE82 1336 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 HIRAP54198 1017 aaPredicted RBP12.63□□□□□ -0.39
SPG11-212ENST00000558790 RIPK4P57078 832 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 AIMP1Q12904 312 aaKnown RBP12.63□□□□□ -0.39
SPG11-212ENST00000558790 GRAPQ13588 217 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 KRT24Q2M2I5 525 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 HSP90AB3PQ58FF7 597 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 DDX46Q7L014 1031 aaKnown RBP12.63□□□□□ -0.39
SPG11-212ENST00000558790 COPS6Q7L5N1 327 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 GRAPLQ8TC17 118 aaPredicted RBP12.63□□□□□ -0.39
SPG11-212ENST00000558790 LRRN4Q8WUT4 740 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 BCL2L13Q9BXK5 485 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 PNNQ9H307 717 aaKnown RBP12.63□□□□□ -0.39
SPG11-212ENST00000558790 ZNF408Q9H9D4 720 aa12.63□□□□□ -0.39
SPG11-212ENST00000558790 BBOX1O75936 387 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 TMPOP42166 694 aaKnown RBP12.62□□□□□ -0.39
SPG11-212ENST00000558790 KCNC4Q03721 635 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 FLIIQ13045 1269 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 DLK2Q6UY11 383 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 BANK1Q8NDB2 785 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 BABAM1Q9NWV8 329 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 PGAP2Q9UHJ9 254 aa12.62□□□□□ -0.39
SPG11-212ENST00000558790 TRMT112Q9UI30 125 aaKnown RBP12.62□□□□□ -0.39
SPG11-212ENST00000558790 TCIRG1Q13488 830 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 TNIP1Q15025 636 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 MSS51Q4VC12 460 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 MTMR14Q8NCE2 650 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 HHIPL1Q96JK4 782 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 HMX1Q9NP08 348 aaPredicted RBP12.61□□□□□ -0.39
SPG11-212ENST00000558790 CHPF2Q9P2E5 772 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 UNC80Q8N2C7 3258 aa12.61□□□□□ -0.39
SPG11-212ENST00000558790 JUNDP17535 347 aa12.6□□□□□ -0.39
SPG11-212ENST00000558790 LMOD3Q0VAK6 560 aa12.6□□□□□ -0.39
SPG11-212ENST00000558790 SLC6A16Q9GZN6 736 aa12.6□□□□□ -0.39
SPG11-212ENST00000558790 CNOT7Q9UIV1 285 aaKnown RBP12.6□□□□□ -0.39
SPG11-212ENST00000558790 TRPA1O75762 1119 aa12.59□□□□□ -0.39
SPG11-212ENST00000558790 EGFRP00533 1210 aa12.59□□□□□ -0.39
SPG11-212ENST00000558790 CDC37L1Q7L3B6 337 aa12.59□□□□□ -0.39
SPG11-212ENST00000558790 TMC4Q7Z404 712 aa12.59□□□□□ -0.39
SPG11-212ENST00000558790 CTU1Q7Z7A3 348 aaKnown RBP12.59□□□□□ -0.39
SPG11-212ENST00000558790 DBNDD1Q9H9R9 158 aa12.59□□□□□ -0.39
SPG11-212ENST00000558790 PAPPA2Q9BXP8 1791 aa12.58□□□□□ -0.39
SPG11-212ENST00000558790 RTL9Q8NET4 1388 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms