RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PSMD14O00487 310 aa11.65□□□□□ -0.54
CUX1-216ENST00000558469 EIF6P56537 245 aaKnown RBP11.65□□□□□ -0.54
CUX1-216ENST00000558469 CXCL9Q07325 125 aa11.65□□□□□ -0.54
CUX1-216ENST00000558469 SPTY2D1Q68D10 685 aaPredicted RBP11.65□□□□□ -0.54
CUX1-216ENST00000558469 ZGPATQ8N5A5 531 aaKnown RBP11.65□□□□□ -0.54
CUX1-216ENST00000558469 KBTBD3Q8NAB2 608 aa11.65□□□□□ -0.54
CUX1-216ENST00000558469 TBC1D22AQ8WUA7 517 aa11.65□□□□□ -0.54
CUX1-216ENST00000558469 FSD1Q9BTV5 496 aa11.65□□□□□ -0.54
CUX1-216ENST00000558469 ADAMTSL1Q8N6G6 1762 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 SALL1Q9NSC2 1324 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 IDH1O75874 414 aaKnown RBP11.64□□□□□ -0.55
CUX1-216ENST00000558469 LDHBP07195 334 aaKnown RBP11.64□□□□□ -0.55
CUX1-216ENST00000558469 PRDX5P30044 214 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 TNIP1Q15025 636 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 DACT2Q5SW24 774 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 CIAPIN1Q6FI81 312 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 ERICH6Q7L0X2 663 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 CERS5Q8N5B7 392 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 RAI14Q9P0K7 980 aa11.64□□□□□ -0.55
CUX1-216ENST00000558469 ECM29Q5VYK3 1845 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 F8W031 263 aaPredicted RBP11.63□□□□□ -0.55
CUX1-216ENST00000558469 VIL1P09327 827 aaKnown RBP11.63□□□□□ -0.55
CUX1-216ENST00000558469 PRKAR2AP13861 404 aaKnown RBP11.63□□□□□ -0.55
CUX1-216ENST00000558469 FKBP1AP62942 108 aaKnown RBP11.63□□□□□ -0.55
CUX1-216ENST00000558469 MAP3K12Q12852 859 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 GRIK5Q16478 980 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 SLC9C2Q5TAH2 1124 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 RSBN1LQ6PCB5 846 aaPredicted RBP11.63□□□□□ -0.55
CUX1-216ENST00000558469 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.63□□□□□ -0.554e-7■□□□□ 10.9
CUX1-216ENST00000558469 GJA3Q9Y6H8 435 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 CDK5RAP2Q96SN8 1893 aa11.63□□□□□ -0.55
CUX1-216ENST00000558469 ZNF541Q9H0D2 1346 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 MECOMQ03112 1051 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 ZSCAN25Q6NSZ9 544 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 DZIP1Q86YF9 867 aaKnown RBP11.62□□□□□ -0.55
CUX1-216ENST00000558469 KIAA0825Q8IV33 1275 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 MAGEB6Q8N7X4 407 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 SUGT1Q9Y2Z0 365 aa11.62□□□□□ -0.55
CUX1-216ENST00000558469 MYO3BQ8WXR4 1341 aa11.61□□□□□ -0.55
CUX1-216ENST00000558469 RNF113AO15541 343 aaKnown RBP11.61□□□□□ -0.55
CUX1-216ENST00000558469 CHGBP05060 677 aa11.61□□□□□ -0.55
CUX1-216ENST00000558469 PDE6AP16499 860 aa11.61□□□□□ -0.55
CUX1-216ENST00000558469 LRRFIP1Q32MZ4 808 aaKnown RBP11.61□□□□□ -0.55
CUX1-216ENST00000558469 SLFNL1Q499Z3 407 aa11.61□□□□□ -0.55
CUX1-216ENST00000558469 NAA16Q6N069 864 aaPredicted RBP11.61□□□□□ -0.55
CUX1-216ENST00000558469 AGBL3Q8NEM8 1001 aa11.61□□□□□ -0.55
CUX1-216ENST00000558469 NSUN4Q96CB9 384 aaKnown RBP11.61□□□□□ -0.55
CUX1-216ENST00000558469 TTF2Q9UNY4 1162 aaKnown RBP11.61□□□□□ -0.55
CUX1-216ENST00000558469 ZNF532Q9HCE3 1301 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 RFX7Q2KHR2 1363 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 HIP1O00291 1037 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 CDC45O75419 566 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 ZFYP08048 801 aaPredicted RBP11.6□□□□□ -0.55
CUX1-216ENST00000558469 CYP7A1P22680 504 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 CHMLP26374 656 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 ADD2P35612 726 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 SCNN1DP51172 638 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 GSTO1P78417 241 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 DIXDC1Q155Q3 683 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 TICAM2Q86XR7 235 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 GPC2Q8N158 579 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 ZNF384Q8TF68 577 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 GMLQ99445 158 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 DIAPH3Q9NSV4 1193 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 MAST3O60307 1309 aa11.6□□□□□ -0.55
CUX1-216ENST00000558469 FOCADQ5VW36 1801 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 TCRBV5S4A2TA0A5A2 114 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 DDNO94850 711 aaPredicted RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 RPS12P25398 132 aaKnown RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 GMPSP49915 693 aaPredicted RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 NMIQ13287 307 aaPredicted RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 UBE3CQ15386 1083 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 DPY19L2Q6NUT2 758 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 CASC1Q6TDU7 716 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 CWC27Q6UX04 472 aaKnown RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 SLF2Q8IX21 1173 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
CUX1-216ENST00000558469 ZC3H4Q9UPT8 1303 aaKnown RBP11.59□□□□□ -0.55
CUX1-216ENST00000558469 SCN4AP35499 1836 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 POLR2AP24928 1970 aaKnown RBP11.58□□□□□ -0.56
CUX1-216ENST00000558469 A0A0D9SFI3 127 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 IGSF3O75054 1194 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 LDHCP07864 332 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 USP17L8P0C7I0 530 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 RBM5P52756 815 aaKnown RBP eCLIP11.58□□□□□ -0.56
CUX1-216ENST00000558469 ZMYM1Q5SVZ6 1142 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 CHADLQ6NUI6 762 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 ADGRA1Q86SQ6 560 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 OGFOD1Q8N543 542 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 DPF2Q92785 391 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 TEKT1Q969V4 418 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 SEC62Q99442 399 aaKnown RBP11.58□□□□□ -0.56
CUX1-216ENST00000558469 HDAC9Q9UKV0 1011 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 BAZ2AQ9UIF9 1905 aaKnown RBP11.58□□□□□ -0.56
CUX1-216ENST00000558469 MROH7-TTC4A0A0A0MT08 1334 aa11.58□□□□□ -0.56
CUX1-216ENST00000558469 MYH1P12882 1939 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 SHTN1A0MZ66 631 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 M0R2C6 588 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 CRKP46108 304 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 HDLBPQ00341 1268 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms