RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 SLC16A10Q8TF71 515 aa14.83□□□□□ -0.04
SHMT2-233ENST00000557529 MAGEB6P1A0A0J9YX57 407 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 NFKBIBQ15653 356 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 TTLL5Q6EMB2 1281 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 STOX1Q6ZVD7 989 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 DHX32Q7L7V1 743 aaKnown RBP14.82□□□□□ -0.04
SHMT2-233ENST00000557529 NACAP1Q9BZK3 213 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 ARMT1Q9H993 441 aa14.82□□□□□ -0.04
SHMT2-233ENST00000557529 MYO5AQ9Y4I1 1855 aaKnown RBP14.82□□□□□ -0.04
SHMT2-233ENST00000557529 DUOX1Q9NRD9 1551 aa14.81□□□□□ -0.04
SHMT2-233ENST00000557529 C6orf229H3BNL8 230 aa14.81□□□□□ -0.04
SHMT2-233ENST00000557529 RAB3GAP1Q15042 981 aa14.81□□□□□ -0.04
SHMT2-233ENST00000557529 CD209Q9NNX6 404 aa14.81□□□□□ -0.04
SHMT2-233ENST00000557529 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-233ENST00000557529 IL1R1P14778 569 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 NBR1Q14596 966 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 SLC51AQ86UW1 340 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 IFNL3Q8IZI9 196 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 LCORLQ8N3X6 602 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 MPNDQ8N594 471 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 CNKSR1Q969H4 720 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 ZNF622Q969S3 477 aaKnown RBP eCLIP14.8□□□□□ -0.04
SHMT2-233ENST00000557529 NSUN4Q96CB9 384 aaKnown RBP14.8□□□□□ -0.04
SHMT2-233ENST00000557529 NAPBQ9H115 298 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 POLLQ9UGP5 575 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 SLC4A4Q9Y6R1 1079 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 MYH13Q9UKX3 1938 aa14.8□□□□□ -0.04
SHMT2-233ENST00000557529 LTBP1Q14766 1721 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 GSG1L2A8MUP6 293 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 HAND2P61296 217 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 GSTO1P78417 241 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 FGD1P98174 961 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 EXOSC10Q01780 885 aaKnown RBP14.79□□□□□ -0.04
SHMT2-233ENST00000557529 MECOMQ03112 1051 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 TOB2Q14106 344 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-233ENST00000557529 DPP8Q6V1X1 898 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-233ENST00000557529 RALYLQ86SE5 291 aaKnown RBP14.79□□□□□ -0.04
SHMT2-233ENST00000557529 MIGA1Q8NAN2 632 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 NCOA7Q8NI08 942 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 WDR19Q8NEZ3 1342 aa14.79□□□□□ -0.04
SHMT2-233ENST00000557529 COL11A2P13942 1736 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-233ENST00000557529 LDHBP07195 334 aaKnown RBP14.78□□□□□ -0.04
SHMT2-233ENST00000557529 TRDNQ13061 729 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 Q6ZUG5 572 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 DZIP1Q86YF9 867 aaKnown RBP14.78□□□□□ -0.04
SHMT2-233ENST00000557529 FBXL16Q8N461 479 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 TBC1D22AQ8WUA7 517 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 GPR101Q96P66 508 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-233ENST00000557529 EYA3Q99504 573 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 RIOK1Q9BRS2 568 aaKnown RBP14.78□□□□□ -0.04
SHMT2-233ENST00000557529 COA1Q9GZY4 146 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 TPCN1Q9ULQ1 816 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 MAST2Q6P0Q8 1798 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 CACNA1SQ13698 1873 aa14.78□□□□□ -0.04
SHMT2-233ENST00000557529 A0A0G2JLW4 131 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 PRDX5P30044 214 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 MCM5P33992 734 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 TDO2P48775 406 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 ME3Q16798 604 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 ADGRA1Q86SQ6 560 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 CHMP4CQ96CF2 233 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 TCEANC2Q96MN5 208 aa14.77□□□□□ -0.04
SHMT2-233ENST00000557529 ZC3H12CQ9C0D7 883 aaKnown RBP14.77□□□□□ -0.04
SHMT2-233ENST00000557529 EPB41L4AQ9HCS5 686 aaPredicted RBP14.77□□□□□ -0.04
SHMT2-233ENST00000557529 LDHCP07864 332 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 COL9A3Q14050 684 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-233ENST00000557529 CC2D2BQ6DHV5 1058 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 GIMAP6Q6P9H5 292 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 CERS3Q8IU89 383 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 ZNF384Q8TF68 577 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 TNPO1Q92973 898 aaKnown RBP14.76□□□□□ -0.05
SHMT2-233ENST00000557529 GBP4Q96PP9 640 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 LARP6Q9BRS8 491 aaKnown RBP14.76□□□□□ -0.05
SHMT2-233ENST00000557529 AGXT2Q9BYV1 514 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 SMC3Q9UQE7 1217 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 C10orf71Q711Q0 1435 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 FAM205AQ6ZU69 1335 aa14.76□□□□□ -0.05
SHMT2-233ENST00000557529 PRKAB2O43741 272 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 LARGE1O95461 756 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 CCDC83Q8IWF9 413 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 MB21D2Q8IYB1 491 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-233ENST00000557529 BRF1Q92994 677 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 CRNKL1Q9BZJ0 848 aaKnown RBP14.75□□□□□ -0.05
SHMT2-233ENST00000557529 NBPF3Q9H094 633 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 CNNM2Q9H8M5 875 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 JAG2Q9Y219 1238 aa14.75□□□□□ -0.05
SHMT2-233ENST00000557529 LAMA4Q16363 1823 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 PRC1O43663 620 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 PDIA4P13667 645 aaKnown RBP14.74□□□□□ -0.05
SHMT2-233ENST00000557529 CLEC17AQ6ZS10 378 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 TBC1D10CQ8IV04 446 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 SLF2Q8IX21 1173 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 NOL10Q9BSC4 688 aaKnown RBP14.74□□□□□ -0.05
SHMT2-233ENST00000557529 KRT23Q9C075 422 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 RNF41Q9H4P4 317 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-233ENST00000557529 SUGT1Q9Y2Z0 365 aa14.74□□□□□ -0.05
SHMT2-233ENST00000557529 BAG3O95817 575 aa14.73□□□□□ -0.05
SHMT2-233ENST00000557529 CHRNA5P30532 468 aa14.73□□□□□ -0.05
SHMT2-233ENST00000557529 MCM4P33991 863 aa14.73□□□□□ -0.05
SHMT2-233ENST00000557529 DYNLL1P63167 89 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms