RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 ANKRD44Q8N8A2 993 aa23.06■■□□□ 1.28
VIPAS39-209ENST00000556909 TRIM17Q9Y577 477 aa23.06■■□□□ 1.28
VIPAS39-209ENST00000556909 CRHR2Q13324 411 aa23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 LRRC24Q50LG9 513 aa23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 PRPF38BQ5VTL8 546 aaKnown RBP23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 OTOP1Q7RTM1 612 aa23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 FBXO33Q7Z6M2 555 aa23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 ELP3Q9H9T3 547 aa23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 IQSEC3Q9UPP2 1182 aaPredicted RBP23.05■■□□□ 1.28
VIPAS39-209ENST00000556909 METTL24Q5JXM2 366 aa23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 VPS37DQ86XT2 251 aa23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 MRPL50Q8N5N7 158 aaKnown RBP23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 VGLL2Q8N8G2 317 aa23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 OPTNQ96CV9 577 aa23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 PTPN18Q99952 460 aa23.04■■□□□ 1.28
VIPAS39-209ENST00000556909 TESPA1A2RU30 521 aaPredicted RBP23.03■■□□□ 1.28
VIPAS39-209ENST00000556909 TCP10L2B9ZVM9 353 aa23.03■■□□□ 1.28
VIPAS39-209ENST00000556909 CHAF1AQ13111 956 aaPredicted RBP23.03■■□□□ 1.28
VIPAS39-209ENST00000556909 OTUD7BQ6GQQ9 843 aa23.03■■□□□ 1.28
VIPAS39-209ENST00000556909 TMEM39BQ9GZU3 492 aa23.03■■□□□ 1.28
VIPAS39-209ENST00000556909 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
VIPAS39-209ENST00000556909 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.02■■□□□ 1.28
VIPAS39-209ENST00000556909 ERO1AQ96HE7 468 aa23.02■■□□□ 1.28
VIPAS39-209ENST00000556909 PTPRCP08575 1304 aa23.02■■□□□ 1.28
VIPAS39-209ENST00000556909 PDE8BO95263 885 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 TNNI2P48788 182 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 CAVIN4Q5BKX8 364 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 KLHDC4Q8TBB5 520 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 CD99L2Q8TCZ2 262 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 TBC1D22AQ8WUA7 517 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 CNKSR2Q8WXI2 1034 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 BRCA2P51587 3418 aa23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 MKI67P46013 3256 aaKnown RBP23.01■■□□□ 1.27
VIPAS39-209ENST00000556909 KIAA0100Q14667 2235 aaKnown RBP23■■□□□ 1.27
VIPAS39-209ENST00000556909 HDLBPQ00341 1268 aaKnown RBP23■■□□□ 1.27
VIPAS39-209ENST00000556909 VGLL4Q14135 290 aa23■■□□□ 1.27
VIPAS39-209ENST00000556909 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23■■□□□ 1.27
VIPAS39-209ENST00000556909 MS4A4AQ96JQ5 239 aa23■■□□□ 1.27
VIPAS39-209ENST00000556909 FRAT2O75474 233 aaPredicted RBP22.99■■□□□ 1.27
VIPAS39-209ENST00000556909 TEKT1Q969V4 418 aa22.99■■□□□ 1.27
VIPAS39-209ENST00000556909 CACNB3P54284 484 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 MAP3K9P80192 1104 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 BRI3BPQ8WY22 251 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 SSH1Q8WYL5 1049 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 PTPN22Q9Y2R2 807 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 KIF16BQ96L93 1317 aa22.98■■□□□ 1.27
VIPAS39-209ENST00000556909 BCAMP50895 628 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 CAP1Q01518 475 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 SP3Q02447 781 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 ZDHHC15Q96MV8 337 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 USP44Q9H0E7 712 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 CSADQ9Y600 493 aa22.97■■□□□ 1.27
VIPAS39-209ENST00000556909 ZSWIM8A7E2V4 1837 aa22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 FGFR2P21802 821 aa22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 PUM3Q15397 648 aaKnown RBP22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 INTS3Q68E01 1043 aaKnown RBP22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 OTUD5Q96G74 571 aa22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 EFCC1Q9HA90 598 aa22.96■■□□□ 1.27
VIPAS39-209ENST00000556909 CCL15-CCL14A0A0B4J2E2 113 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 POTEFA5A3E0 1075 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 E9PSI1 815 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 MAST3O60307 1309 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 GTF2A2P52657 109 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 CCL15Q16663 113 aa22.95■■□□□ 1.26
VIPAS39-209ENST00000556909 RPAP1Q9BWH6 1393 aaPredicted RBP22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 SPDYE5A6NIY4 337 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 IFIT1P09914 478 aaKnown RBP22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 APOBEC3HQ6NTF7 200 aaKnown RBP22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 MRIQ9BWK5 157 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 TMOD2Q9NZR1 351 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 SUGT1Q9Y2Z0 365 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 SNCAIPQ9Y6H5 919 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 AK9Q5TCS8 1911 aa22.94■■□□□ 1.26
VIPAS39-209ENST00000556909 RFX5P48382 616 aaPredicted RBP22.93■■□□□ 1.26
VIPAS39-209ENST00000556909 TAF1CQ15572 869 aaPredicted RBP22.93■■□□□ 1.26
VIPAS39-209ENST00000556909 FKBP1CQ5VVH2 108 aa22.93■■□□□ 1.26
VIPAS39-209ENST00000556909 FAM83AQ86UY5 434 aa22.93■■□□□ 1.26
VIPAS39-209ENST00000556909 ARMC5Q96C12 935 aa22.93■■□□□ 1.26
VIPAS39-209ENST00000556909 FAM43AQ8N2R8 423 aa22.92■■□□□ 1.26
VIPAS39-209ENST00000556909 WRNIP1Q96S55 665 aa22.92■■□□□ 1.26
VIPAS39-209ENST00000556909 ZFYVE28Q9HCC9 887 aa22.92■■□□□ 1.26
VIPAS39-209ENST00000556909 EYA2O00167 538 aa22.91■■□□□ 1.26
VIPAS39-209ENST00000556909 SLC5A1P13866 664 aa22.9■■□□□ 1.26
VIPAS39-209ENST00000556909 SLFN5Q08AF3 891 aa22.9■■□□□ 1.26
VIPAS39-209ENST00000556909 HHIPL2Q6UWX4 724 aa22.9■■□□□ 1.26
VIPAS39-209ENST00000556909 ZKSCAN4Q969J2 545 aaPredicted RBP22.9■■□□□ 1.26
VIPAS39-209ENST00000556909 HOOK2Q96ED9 719 aa22.9■■□□□ 1.26
VIPAS39-209ENST00000556909 ALDH1L2Q3SY69 923 aa22.89■■□□□ 1.25
VIPAS39-209ENST00000556909 ERO1BQ86YB8 467 aa22.89■■□□□ 1.25
VIPAS39-209ENST00000556909 LPIN2Q92539 896 aa22.89■■□□□ 1.25
VIPAS39-209ENST00000556909 PCDH10Q9P2E7 1040 aa22.89■■□□□ 1.25
VIPAS39-209ENST00000556909 DOCK2Q92608 1830 aa22.89■■□□□ 1.25
VIPAS39-209ENST00000556909 CETPP11597 493 aa22.88■■□□□ 1.25
VIPAS39-209ENST00000556909 ATG9AQ7Z3C6 839 aa22.88■■□□□ 1.25
VIPAS39-209ENST00000556909 WDR66Q8TBY9 1149 aa22.88■■□□□ 1.25
VIPAS39-209ENST00000556909 MYH2Q9UKX2 1941 aa22.88■■□□□ 1.25
VIPAS39-209ENST00000556909 IRF6O14896 467 aa22.87■■□□□ 1.25
VIPAS39-209ENST00000556909 PPIL2Q13356 520 aa22.87■■□□□ 1.25
VIPAS39-209ENST00000556909 DCAF15Q66K64 600 aa22.87■■□□□ 1.25
VIPAS39-209ENST00000556909 ZCCHC17Q9NP64 241 aaKnown RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms