RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 HACL1Q9UJ83 578 aa17.04■□□□□ 0.32
VIPAS39-208ENST00000556412 SUGT1Q9Y2Z0 365 aa17.04■□□□□ 0.32
VIPAS39-208ENST00000556412 MAST3O60307 1309 aa17.04■□□□□ 0.32
VIPAS39-208ENST00000556412 SCN9AQ15858 1988 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 IQCA1LA6NCM1 817 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 MECOMQ03112 1051 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 MAP3K12Q12852 859 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 TBC1D10BQ4KMP7 808 aaPredicted RBP17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 SAMD7Q7Z3H4 446 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 FSD1Q9BTV5 496 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 NMRK2Q9NPI5 230 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 CCDC88AQ3V6T2 1871 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 TTC22Q5TAA0 569 aa17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 GPBP1L1Q9HC44 474 aaPredicted RBP17.03■□□□□ 0.32
VIPAS39-208ENST00000556412 NAA16Q6N069 864 aaPredicted RBP17.02■□□□□ 0.31
VIPAS39-208ENST00000556412 MAGEB6Q8N7X4 407 aa17.02■□□□□ 0.31
VIPAS39-208ENST00000556412 TEKT1Q969V4 418 aa17.02■□□□□ 0.31
VIPAS39-208ENST00000556412 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.02■□□□□ 0.31
VIPAS39-208ENST00000556412 MYOZ2Q9NPC6 264 aa17.02■□□□□ 0.31
VIPAS39-208ENST00000556412 DICER1Q9UPY3 1922 aaKnown RBP17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 EGFRP00533 1210 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 GSPT1P15170 499 aaKnown RBP17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 EPHX2P34913 555 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 CRKP46108 304 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 ZNF280AP59817 542 aaPredicted RBP17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 DLGAP5Q15398 846 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 KIF4BQ2VIQ3 1234 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 CFAP100Q494V2 611 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 EAPPQ56P03 285 aaPredicted RBP17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 SLC9C2Q5TAH2 1124 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 CNTROBQ8N137 903 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 KBTBD3Q8NAB2 608 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 NSUN4Q96CB9 384 aaKnown RBP17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 EVI5LQ96CN4 794 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 PCDHAC2Q9Y5I4 1007 aa17.01■□□□□ 0.31
VIPAS39-208ENST00000556412 VEGFAP15692 232 aaPredicted RBP17■□□□□ 0.31
VIPAS39-208ENST00000556412 GSTO1P78417 241 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 TRPM4Q8TD43 1214 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 ADARB2Q9NS39 739 aaKnown RBP17■□□□□ 0.31
VIPAS39-208ENST00000556412 SERPINA10Q9UK55 444 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 POTECB2RU33 542 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 CYP7A1P22680 504 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 SLF2Q8IX21 1173 aa17■□□□□ 0.31
VIPAS39-208ENST00000556412 TAF1DQ9H5J8 278 aaPredicted RBP17■□□□□ 0.31
VIPAS39-208ENST00000556412 CHD4Q14839 1912 aa16.99■□□□□ 0.31
VIPAS39-208ENST00000556412 CHGBP05060 677 aa16.99■□□□□ 0.31
VIPAS39-208ENST00000556412 PDE6AP16499 860 aa16.99■□□□□ 0.31
VIPAS39-208ENST00000556412 ZNF384Q8TF68 577 aa16.99■□□□□ 0.31
VIPAS39-208ENST00000556412 SLFNL1Q499Z3 407 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 ZSCAN25Q6NSZ9 544 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 DAGLAQ9Y4D2 1042 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 MROH7-TTC4A0A0A0MT08 1334 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 ZNF532Q9HCE3 1301 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 LDHCP07864 332 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 SDSP20132 328 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 HDLBPQ00341 1268 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 LRRFIP1Q32MZ4 808 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 HHIPL2Q6UWX4 724 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 MIGA1Q8NAN2 632 aa16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 NOL10Q9BSC4 688 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-208ENST00000556412 BTDP43251 543 aa16.97■□□□□ 0.31
VIPAS39-208ENST00000556412 MMP14P50281 582 aa16.97■□□□□ 0.31
VIPAS39-208ENST00000556412 NBPF9Q3BBW0 867 aa16.97■□□□□ 0.31
VIPAS39-208ENST00000556412 ADGRA1Q86SQ6 560 aa16.97■□□□□ 0.31
VIPAS39-208ENST00000556412 CLEC11AQ9Y240 323 aa16.97■□□□□ 0.31
VIPAS39-208ENST00000556412 SPDYE2BA6NHP3 402 aa16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 WNT10BO00744 389 aa16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 SPDYE6P0CI01 402 aa16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 ADD2P35612 726 aa16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 HIRAP54198 1017 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 USP50Q70EL3 339 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 PNMA8AQ86V59 439 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 ZNF784Q8NCA9 323 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 PRMT6Q96LA8 375 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 ZDHHC15Q96MV8 337 aa16.96■□□□□ 0.31
VIPAS39-208ENST00000556412 CLRN2A0PK11 232 aa16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 RNF113AO15541 343 aaKnown RBP16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 MYO1BO43795 1136 aa16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 MRIQ9BWK5 157 aa16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 TDRD3Q9H7E2 651 aaKnown RBP16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 AATFQ9NY61 560 aaKnown RBP eCLIP16.96■□□□□ 0.3
VIPAS39-208ENST00000556412 ASTN2O75129 1339 aaPredicted RBP16.95■□□□□ 0.3
VIPAS39-208ENST00000556412 IGSF3O75054 1194 aa16.95■□□□□ 0.3
VIPAS39-208ENST00000556412 APOBEC3HQ6NTF7 200 aaKnown RBP16.95■□□□□ 0.3
VIPAS39-208ENST00000556412 VEZTQ9HBM0 779 aa16.95■□□□□ 0.3
VIPAS39-208ENST00000556412 GAKO14976 1311 aa16.95■□□□□ 0.3
VIPAS39-208ENST00000556412 WDR90Q96KV7 1748 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 BAG3O95817 575 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 ZFYP08048 801 aaPredicted RBP16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 POTEIP0CG38 1075 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 POTEJP0CG39 1038 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 UBE3CQ15386 1083 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 BMP2KLQ5H9B9 411 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 MTMR14Q8NCE2 650 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 FAM163AQ96GL9 167 aaPredicted RBP16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 DIAPH3Q9NSV4 1193 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 USP40Q9NVE5 1235 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 GGA3Q9NZ52 723 aa16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 ZNF646O15015 1829 aaPredicted RBP16.94■□□□□ 0.3
VIPAS39-208ENST00000556412 AKAP11Q9UKA4 1901 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms