RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 ZNF454Q8N9F8 522 aa8.5□□□□□ -1.05
SLIRP-204ENST00000555890 RGS22Q8NE09 1264 aa8.5□□□□□ -1.05
SLIRP-204ENST00000555890 ADAMTS19Q8TE59 1207 aa8.5□□□□□ -1.05
SLIRP-204ENST00000555890 SRP68Q9UHB9 627 aaKnown RBP8.5□□□□□ -1.05
SLIRP-204ENST00000555890 TBC1D2BQ9UPU7 963 aa8.5□□□□□ -1.05
SLIRP-204ENST00000555890 ZNF831Q5JPB2 1677 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 HTTP42858 3142 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 COL5A3P25940 1745 aaPredicted RBP8.49□□□□□ -1.05
SLIRP-204ENST00000555890 RBBP6Q7Z6E9 1792 aaKnown RBP8.49□□□□□ -1.05
SLIRP-204ENST00000555890 RCCD1A6NED2 376 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 POM121CA8CG34 1229 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 FKTNO75072 461 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 AP1G2O75843 785 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 TBC1D8O95759 1140 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 PHKG2P15735 406 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 RGS3P49796 1198 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 CCT4P50991 539 aaKnown RBP8.49□□□□□ -1.05
SLIRP-204ENST00000555890 EIF4A1P60842 406 aaKnown RBP8.49□□□□□ -1.05
SLIRP-204ENST00000555890 HDGFL1Q5TGJ6 251 aa8.49□□□□□ -1.05
SLIRP-204ENST00000555890 FLNBO75369 2602 aaKnown RBP8.49□□□□□ -1.05
SLIRP-204ENST00000555890 NCOR1O75376 2440 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 MOXD2PA6NHM9 499 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 WTIPA6NIX2 430 aaPredicted RBP8.48□□□□□ -1.05
SLIRP-204ENST00000555890 CSPP1Q1MSJ5 1256 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 SLC4A8Q2Y0W8 1093 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 SAMD7Q7Z3H4 446 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 FAM161BQ96MY7 647 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 HCSTQ9UBK5 93 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 CNTNAP4Q9C0A0 1308 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 DLEC1Q9Y238 1755 aa8.48□□□□□ -1.05
SLIRP-204ENST00000555890 AFDNP55196 1824 aaKnown RBP8.47□□□□□ -1.05
SLIRP-204ENST00000555890 RFC4P35249 363 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 MFAP1P55081 439 aaKnown RBP8.47□□□□□ -1.05
SLIRP-204ENST00000555890 FKBP5Q13451 457 aaPredicted RBP8.47□□□□□ -1.05
SLIRP-204ENST00000555890 QPCTQ16769 361 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 RPAP2Q8IXW5 612 aaPredicted RBP8.47□□□□□ -1.05
SLIRP-204ENST00000555890 PBXIP1Q96AQ6 731 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 BACH2Q9BYV9 841 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 ADAM33Q9BZ11 813 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 ZNF408Q9H9D4 720 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 SLC52A2Q9HAB3 445 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 PDZRN3Q9UPQ7 1066 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 TRIM17Q9Y577 477 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 LTBP3Q9NS15 1303 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 FER1L6Q2WGJ9 1857 aa8.47□□□□□ -1.05
SLIRP-204ENST00000555890 NRXN2Q9P2S2 1712 aa8.46□□□□□ -1.05
SLIRP-204ENST00000555890 USP17L8P0C7I0 530 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 EIF2S2P20042 333 aaKnown RBP8.46□□□□□ -1.06
SLIRP-204ENST00000555890 SLC4A10Q6U841 1118 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 G2E3Q7L622 706 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 SMC5Q8IY18 1101 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 CDX2Q99626 313 aaPredicted RBP8.46□□□□□ -1.06
SLIRP-204ENST00000555890 TAOK3Q9H2K8 898 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 TMOD3Q9NYL9 352 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 NDUFB9Q9Y6M9 179 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 USP42Q9H9J4 1324 aaKnown RBP8.46□□□□□ -1.06
SLIRP-204ENST00000555890 FASNP49327 2511 aaKnown RBP8.46□□□□□ -1.06
SLIRP-204ENST00000555890 GPR179Q6PRD1 2367 aa8.46□□□□□ -1.06
SLIRP-204ENST00000555890 DDX11L8A8MPP1 907 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 KCNQ3O43525 872 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 GNAI3P08754 354 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 ZNF157P51786 506 aaPredicted RBP8.45□□□□□ -1.06
SLIRP-204ENST00000555890 CABP4P57796 275 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 WASHC4Q2M389 1173 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 RTL5Q5HYW3 569 aaPredicted RBP8.45□□□□□ -1.06
SLIRP-204ENST00000555890 TTC5Q8N0Z6 440 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 DBF4Q9UBU7 674 aaPredicted RBP8.45□□□□□ -1.06
SLIRP-204ENST00000555890 MTMR7Q9Y216 660 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 HEG1Q9ULI3 1381 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 CFAP54Q96N23 3096 aa8.45□□□□□ -1.06
SLIRP-204ENST00000555890 ZNF292O60281 2723 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 HMMRO75330 724 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 DNAJB2P25686 324 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 LMOD1P29536 600 aaPredicted RBP8.44□□□□□ -1.06
SLIRP-204ENST00000555890 ANP32AP39687 249 aaKnown RBP8.44□□□□□ -1.06
SLIRP-204ENST00000555890 LSM11P83369 360 aaKnown RBP eCLIP8.44□□□□□ -1.06
SLIRP-204ENST00000555890 KCNA1Q09470 495 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 INTS5Q6P9B9 1019 aaKnown RBP8.44□□□□□ -1.06
SLIRP-204ENST00000555890 ZNF790Q6PG37 636 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 USP50Q70EL3 339 aaPredicted RBP8.44□□□□□ -1.06
SLIRP-204ENST00000555890 OTOP1Q7RTM1 612 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 SKAP1Q86WV1 359 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 ANKRD44Q8N8A2 993 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 NFATC2IPQ8NCF5 419 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 ZNF333Q96JL9 665 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 GDF15Q99988 308 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 HYPKQ9NX55 129 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 USTQ9Y2C2 406 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 SPTBN4Q9H254 2564 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 MRC1P22897 1456 aa8.44□□□□□ -1.06
SLIRP-204ENST00000555890 ERVV-2B6SEH9 535 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 F6X3S4 739 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 GPR37L1O60883 481 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 BRD1O95696 1058 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 DDX58O95786 925 aaKnown RBP8.43□□□□□ -1.06
SLIRP-204ENST00000555890 GNAI2P04899 355 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 NDUFV2P19404 249 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 NUCB1Q02818 461 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 TDHQ8IZJ6 230 aa8.43□□□□□ -1.06
SLIRP-204ENST00000555890 ATXN2LQ8WWM7 1075 aaKnown RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms