RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ZSCAN23Q3MJ62 389 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 NLRP3Q96P20 1036 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 LRP2BPQ9P2M1 347 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 BCORQ6W2J9 1755 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.78□□□□□ -0.2
SHMT2-212ENST00000554467 TCRBV5S4A2TA0A5A2 114 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 EXOSC10Q01780 885 aaKnown RBP13.78□□□□□ -0.2
SHMT2-212ENST00000554467 UTP14CQ5TAP6 766 aaKnown RBP13.78□□□□□ -0.2
SHMT2-212ENST00000554467 VPS37DQ86XT2 251 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 ZNF512BQ96KM6 892 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-212ENST00000554467 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 DYNC1I1O14576 645 aa13.77□□□□□ -0.2
SHMT2-212ENST00000554467 ZNF213O14771 459 aa13.77□□□□□ -0.2
SHMT2-212ENST00000554467 SF3B3Q15393 1217 aaKnown RBP13.77□□□□□ -0.2
SHMT2-212ENST00000554467 PDLIM2Q96JY6 352 aa13.77□□□□□ -0.2
SHMT2-212ENST00000554467 MYH7P12883 1935 aa13.77□□□□□ -0.2
SHMT2-212ENST00000554467 PDE4CQ08493 712 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 ZSCAN25Q6NSZ9 544 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 TBC1D10CQ8IV04 446 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 RBSNQ9H1K0 784 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 KDM4AO75164 1064 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 MAP3K12Q12852 859 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 NFIXQ14938 502 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 TPTE2Q6XPS3 522 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 MPNDQ8N594 471 aa13.77□□□□□ -0.21
SHMT2-212ENST00000554467 RPS8P62241 208 aaKnown RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 ADGRA1Q86SQ6 560 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 BSDC1Q9NW68 430 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 CTNNA3Q9UI47 895 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 NHSQ6T4R5 1651 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 SYCE3A1L190 88 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 PRC1O43663 620 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 CTDSPL2Q05D32 466 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 UBE3CQ15386 1083 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 LCORLQ8N3X6 602 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 GPR101Q96P66 508 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 STRBPQ96SI9 672 aaKnown RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 ALDH8A1Q9H2A2 487 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 RAI14Q9P0K7 980 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 RTL9Q8NET4 1388 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 SMIM22K7EJ46 135 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 GUCY1B3Q02153 619 aa13.76□□□□□ -0.21
SHMT2-212ENST00000554467 CCDC94Q9BW85 323 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 EPB41L4AQ9HCS5 686 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-212ENST00000554467 ATRNO75882 1429 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 HMGB1P09429 215 aaKnown RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 RXRAP19793 462 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 ANTXR2P58335 489 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 HS1BP3Q53T59 392 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 RALYLQ86SE5 291 aaKnown RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 BCL11BQ9C0K0 894 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 NYXQ9GZU5 481 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 TFIP11Q9UBB9 837 aaKnown RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 CICQ96RK0 1608 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 ONECUT3O60422 494 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-212ENST00000554467 CTDNEP1O95476 244 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 TXNRD3Q86VQ6 643 aa13.75□□□□□ -0.21
SHMT2-212ENST00000554467 B4E1Z4 1266 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 CHAF1AQ13111 956 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-212ENST00000554467 BBXQ8WY36 941 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-212ENST00000554467 TSC1Q92574 1164 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 FAM84BQ96KN1 310 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-212ENST00000554467 SENP2Q9HC62 589 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 PDIA3P30101 505 aaKnown RBP13.74□□□□□ -0.21
SHMT2-212ENST00000554467 SBF2Q86WG5 1849 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 COL1A1P02452 1464 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-212ENST00000554467 CYP7A1P22680 504 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 SLC10A5Q5PT55 438 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 KRT27Q7Z3Y8 459 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 FAM184AQ8NB25 1140 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 SDR42E1Q8WUS8 393 aa13.74□□□□□ -0.21
SHMT2-212ENST00000554467 PTPDC1A2A3K4 754 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 PFKFB2O60825 505 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 ZNF445P59923 1031 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CYB5R4Q7L1T6 521 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CCDC144CPQ8IYA2 1237 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 MB21D2Q8IYB1 491 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-212ENST00000554467 ZNF710Q8N1W2 664 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 TOMM22Q9NS69 142 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 ZKSCAN5Q9Y2L8 839 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 SCN7AQ01118 1682 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 NEDD4P46934 1319 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 KLF18A0A0U1RQI7 1052 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 RRP12Q5JTH9 1297 aaKnown RBP13.73□□□□□ -0.21
SHMT2-212ENST00000554467 NSUN7Q8NE18 718 aaKnown RBP13.73□□□□□ -0.21
SHMT2-212ENST00000554467 NCOA7Q8NI08 942 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 NAPBQ9H115 298 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 TACC3Q9Y6A5 838 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 SLC4A4Q9Y6R1 1079 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CASZ1Q86V15 1759 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 H3BQV1 296 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 TM4SF1P30408 202 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 MCM5P33992 734 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CEBPZQ03701 1054 aaKnown RBP13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CAVIN4Q5BKX8 364 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 IFFO2Q5TF58 517 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 IFNL3Q8IZI9 196 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 CNBD1Q8NA66 436 aa13.73□□□□□ -0.21
SHMT2-212ENST00000554467 C4BP0C0L5 1744 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 GOLGA8BA8MQT2 603 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms