RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GYG1P46976 350 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 NUCB1Q02818 461 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 MTX1Q13505 466 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 POTEDQ86YR6 584 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 COA1Q9GZY4 146 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 CD209Q9NNX6 404 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 RBM27Q9P2N5 1060 aaKnown RBP9.13□□□□□ -0.95
LIMA1-216ENST00000552909 HDAC5Q9UQL6 1122 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 JAG2Q9Y219 1238 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMA1-216ENST00000552909 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-216ENST00000552909 MROH5Q6ZUA9 1318 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 PRPF40AO75400 957 aaKnown RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 CYP2E1P05181 493 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 LMOD1P29536 600 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 HIRAP54198 1017 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 UBE4AQ14139 1066 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 C15orf52Q6ZUT6 534 aaKnown RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 SAMD7Q7Z3H4 446 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 MICALL2Q8IY33 904 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 GPT2Q8TD30 523 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 TSC1Q92574 1164 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 FAM84BQ96KN1 310 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 COPRSQ9NQ92 184 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 SYCE3A1L190 88 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 USP17L3A6NCW0 530 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 USP17L4A6NCW7 530 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 GTF2IP78347 998 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 HTRA3P83110 453 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 ATP8B2P98198 1209 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 DACT2Q5SW24 774 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 ANKRD45Q5TZF3 282 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 MAP1SQ66K74 1059 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 TTLL5Q6EMB2 1281 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 RSBN1LQ6PCB5 846 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-216ENST00000552909 USP17L1Q7RTZ2 530 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 PDCL2Q8N4E4 241 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 SMC1BQ8NDV3 1235 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 TRPM4Q8TD43 1214 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 PIBF1Q8WXW3 757 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 DPF2Q92785 391 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 FBXW7Q969H0 707 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 GMLQ99445 158 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 LNPKQ9C0E8 428 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 CLEC11AQ9Y240 323 aa9.12□□□□□ -0.95
LIMA1-216ENST00000552909 PSME4Q14997 1843 aa9.11□□□□□ -0.95
LIMA1-216ENST00000552909 FGFR2P21802 821 aa9.11□□□□□ -0.95
LIMA1-216ENST00000552909 RBM26Q5T8P6 1007 aaKnown RBP9.11□□□□□ -0.95
LIMA1-216ENST00000552909 CHD1LQ86WJ1 897 aa9.11□□□□□ -0.95
LIMA1-216ENST00000552909 GCC1Q96CN9 775 aa9.11□□□□□ -0.95
LIMA1-216ENST00000552909 DCTPP1Q9H773 170 aa9.11□□□□□ -0.95
LIMA1-216ENST00000552909 ADARB2Q9NS39 739 aaKnown RBP9.11□□□□□ -0.95
LIMA1-216ENST00000552909 IQSEC3Q9UPP2 1182 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-216ENST00000552909 ZNF646O15015 1829 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-216ENST00000552909 HMMRO75330 724 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 CIAO1O76071 339 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 IL1R1P14778 569 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 BCAMP50895 628 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 FMR1Q06787 632 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 FSTL1Q12841 308 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 NOLC1Q14978 699 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 TBC1D10BQ4KMP7 808 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 CHADLQ6NUI6 762 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 PNMA8AQ86V59 439 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 LDHDQ86WU2 507 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 CWC22Q9HCG8 908 aaKnown RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 TMEM63CQ9P1W3 806 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 ADAMTSL1Q8N6G6 1762 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 SPDYE4A6NLX3 237 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 ITGBL1O95965 494 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 HSPA6P17066 643 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 HIBADHP31937 336 aaKnown RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 RABEP1Q15276 862 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 STRIP1Q5VSL9 837 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 TBC1D9Q6ZT07 1266 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 USP50Q70EL3 339 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 ZNF804AQ7Z570 1209 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 FBXO33Q7Z6M2 555 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 CERS5Q8N5B7 392 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 RNF214Q8ND24 703 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 CEP126Q9P2H0 1117 aa9.1□□□□□ -0.95
LIMA1-216ENST00000552909 POLR2AP24928 1970 aaKnown RBP9.1□□□□□ -0.95
LIMA1-216ENST00000552909 H7C1D1 291 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 APBB1O00213 710 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 MBD3O95983 291 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 CDK11BP21127 795 aaKnown RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 RPS12P25398 132 aaKnown RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 IL15P40933 162 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 TIMM10P62072 90 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 TFCP2Q12800 502 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 POLA2Q14181 598 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 PUM3Q15397 648 aaKnown RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 DLK2Q6UY11 383 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 ZNF771Q7L3S4 317 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 CNTROBQ8N137 903 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 AGBL3Q8NEM8 1001 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 TDRD7Q8NHU6 1098 aaKnown RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 SSH3Q8TE77 659 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 CGNQ9P2M7 1197 aaKnown RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 FBXO3Q9UK99 471 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms