RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 ECM29Q5VYK3 1845 aa14.94□□□□□ -0.02
CKAP4-202ENST00000552828 HDLBPQ00341 1268 aaKnown RBP14.93□□□□□ -0.02
CKAP4-202ENST00000552828 INTS3Q68E01 1043 aaKnown RBP14.93□□□□□ -0.02
CKAP4-202ENST00000552828 ERO1AQ96HE7 468 aa14.93□□□□□ -0.02
CKAP4-202ENST00000552828 MS4A4AQ96JQ5 239 aa14.93□□□□□ -0.02
CKAP4-202ENST00000552828 MRIQ9BWK5 157 aa14.93□□□□□ -0.02
CKAP4-202ENST00000552828 TDRD3Q9H7E2 651 aaKnown RBP14.93□□□□□ -0.02
CKAP4-202ENST00000552828 ZNF521Q96K83 1311 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 CENPFP49454 3210 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 CRKP46108 304 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.92□□□□□ -0.02
CKAP4-202ENST00000552828 CDAN1Q8IWY9 1227 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 VGLL2Q8N8G2 317 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 OPTNQ96CV9 577 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 PTPN22Q9Y2R2 807 aa14.92□□□□□ -0.02
CKAP4-202ENST00000552828 MKI67P46013 3256 aaKnown RBP14.91□□□□□ -0.02
CKAP4-202ENST00000552828 MAP3K9P80192 1104 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 GRIK5Q16478 980 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 ANKRD44Q8N8A2 993 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 TBC1D22AQ8WUA7 517 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 TMEM39BQ9GZU3 492 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 BICC1Q9H694 974 aaKnown RBP14.91□□□□□ -0.02
CKAP4-202ENST00000552828 ELP3Q9H9T3 547 aa14.91□□□□□ -0.02
CKAP4-202ENST00000552828 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.91□□□□□ -0.02
CKAP4-202ENST00000552828 PDE8BO95263 885 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 TNNI2P48788 182 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 SP3Q02447 781 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 LRRC24Q50LG9 513 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 MRPL50Q8N5N7 158 aaKnown RBP14.9□□□□□ -0.02
CKAP4-202ENST00000552828 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.9□□□□□ -0.02
CKAP4-202ENST00000552828 CD99L2Q8TCZ2 262 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 ARMC5Q96C12 935 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 KIF16BQ96L93 1317 aa14.9□□□□□ -0.02
CKAP4-202ENST00000552828 BRCA2P51587 3418 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 TCP10L2B9ZVM9 353 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 GTF2A2P52657 109 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 CAP1Q01518 475 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 VGLL4Q14135 290 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 CAVIN4Q5BKX8 364 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 FKBP1CQ5VVH2 108 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 VPS37DQ86XT2 251 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 BRI3BPQ8WY22 251 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 ZDHHC15Q96MV8 337 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 EFCC1Q9HA90 598 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 SUGT1Q9Y2Z0 365 aa14.89□□□□□ -0.03
CKAP4-202ENST00000552828 POTEFA5A3E0 1075 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 METTL24Q5JXM2 366 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 FAM83AQ86UY5 434 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 CNKSR2Q8WXI2 1034 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 TEKT1Q969V4 418 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 IQSEC3Q9UPP2 1182 aaPredicted RBP14.88□□□□□ -0.03
CKAP4-202ENST00000552828 PTPRCP08575 1304 aa14.88□□□□□ -0.03
CKAP4-202ENST00000552828 FGFR2P21802 821 aa14.87□□□□□ -0.03
CKAP4-202ENST00000552828 BCAMP50895 628 aa14.87□□□□□ -0.03
CKAP4-202ENST00000552828 CHAF1AQ13111 956 aaPredicted RBP14.87□□□□□ -0.03
CKAP4-202ENST00000552828 APOBEC3HQ6NTF7 200 aaKnown RBP14.87□□□□□ -0.03
CKAP4-202ENST00000552828 USP44Q9H0E7 712 aa14.87□□□□□ -0.03
CKAP4-202ENST00000552828 CSADQ9Y600 493 aa14.87□□□□□ -0.03
CKAP4-202ENST00000552828 ARAP2Q8WZ64 1704 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 CCL15-CCL14A0A0B4J2E2 113 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 SPDYE5A6NIY4 337 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 CCL15Q16663 113 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 HHIPL2Q6UWX4 724 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 FAM43AQ8N2R8 423 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 ZFYVE28Q9HCC9 887 aa14.86□□□□□ -0.03
CKAP4-202ENST00000552828 ZCCHC17Q9NP64 241 aaKnown RBP14.86□□□□□ -0.03
CKAP4-202ENST00000552828 OTOFQ9HC10 1997 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 FRAT2O75474 233 aaPredicted RBP14.85□□□□□ -0.03
CKAP4-202ENST00000552828 CACNB3P54284 484 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 ARHGEF6Q15052 776 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 PUM3Q15397 648 aaKnown RBP14.85□□□□□ -0.03
CKAP4-202ENST00000552828 TAF1CQ15572 869 aaPredicted RBP14.85□□□□□ -0.03
CKAP4-202ENST00000552828 ERO1BQ86YB8 467 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 KLHDC4Q8TBB5 520 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 HOOK2Q96ED9 719 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 OTUD5Q96G74 571 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 SNCAIPQ9Y6H5 919 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 MAST3O60307 1309 aa14.85□□□□□ -0.03
CKAP4-202ENST00000552828 E9PSI1 815 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 IFIT1P09914 478 aaKnown RBP14.84□□□□□ -0.03
CKAP4-202ENST00000552828 CETPP11597 493 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 RFX5P48382 616 aaPredicted RBP14.84□□□□□ -0.03
CKAP4-202ENST00000552828 SSH1Q8WYL5 1049 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 GCC1Q96CN9 775 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 ZNF333Q96JL9 665 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 TMOD2Q9NZR1 351 aa14.84□□□□□ -0.03
CKAP4-202ENST00000552828 RPAP1Q9BWH6 1393 aaPredicted RBP14.84□□□□□ -0.03
CKAP4-202ENST00000552828 EYA2O00167 538 aa14.83□□□□□ -0.04
CKAP4-202ENST00000552828 TLR2O60603 784 aa14.83□□□□□ -0.04
CKAP4-202ENST00000552828 PPIL2Q13356 520 aa14.83□□□□□ -0.04
CKAP4-202ENST00000552828 LPIN2Q92539 896 aa14.83□□□□□ -0.04
CKAP4-202ENST00000552828 ZKSCAN4Q969J2 545 aaPredicted RBP14.83□□□□□ -0.04
CKAP4-202ENST00000552828 WRNIP1Q96S55 665 aa14.83□□□□□ -0.04
CKAP4-202ENST00000552828 IRF6O14896 467 aa14.82□□□□□ -0.04
CKAP4-202ENST00000552828 WDHD1O75717 1129 aaPredicted RBP14.82□□□□□ -0.04
CKAP4-202ENST00000552828 EN2P19622 333 aaPredicted RBP14.82□□□□□ -0.04
CKAP4-202ENST00000552828 HNRNPUQ00839 825 aaKnown RBP eCLIP14.82□□□□□ -0.04
CKAP4-202ENST00000552828 SLFN5Q08AF3 891 aa14.82□□□□□ -0.04
CKAP4-202ENST00000552828 SNAPC2Q13487 334 aa14.82□□□□□ -0.04
CKAP4-202ENST00000552828 DCAF15Q66K64 600 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms