RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, human

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS29-208	ENST00000550267	WNT10B	O00744	389 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	SASH1	O94885	1247 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	PCCA	P05165	728 aa	Predicted RBP	13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	HSP90B1	P14625	803 aa	Known RBP	13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	NF2	P35240	595 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	DACT2	Q5SW24	774 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	DUSP27	Q5VZP5	1158 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	ANKRD18A	Q8IVF6	992 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	EPAS1	Q99814	870 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	CFHR5	Q9BXR6	569 aa		13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	PHAX	Q9H814	394 aa	Known RBP	13.6	□□□□□ -0.23
VPS29-208	ENST00000550267	HABP4	Q5JVS0	413 aa	Known RBP	13.59	□□□□□ -0.23
VPS29-208	ENST00000550267	MED23	Q9ULK4	1368 aa		13.58	□□□□□ -0.23
VPS29-208	ENST00000550267	C6orf132	Q5T0Z8	1188 aa		13.58	□□□□□ -0.24
VPS29-208	ENST00000550267	ARMC9	Q7Z3E5	817 aa		13.58	□□□□□ -0.24
VPS29-208	ENST00000550267	OGFOD1	Q8N543	542 aa		13.58	□□□□□ -0.24
VPS29-208	ENST00000550267	CCDC191	Q8NCU4	936 aa		13.58	□□□□□ -0.24
VPS29-208	ENST00000550267	FZD1	Q9UP38	647 aa		13.58	□□□□□ -0.24
VPS29-208	ENST00000550267	SPRYD7	Q5W111	196 aa		13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	CWC25	Q9NXE8	425 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	KIAA1468	Q9P260	1216 aa		13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	ANGEL1	Q9UNK9	670 aa	Known RBP	13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	TRIM17	Q9Y577	477 aa		13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	ZNF646	O15015	1829 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS29-208	ENST00000550267	LDLRAD1	Q5T700	205 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	STRIP1	Q5VSL9	837 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	OTOP1	Q7RTM1	612 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	RUNDC1	Q96C34	613 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	CDC5L	Q99459	802 aa	Known RBP	13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	MBIP	Q9NS73	344 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	MINPP1	Q9UNW1	487 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	MYO3B	Q8WXR4	1341 aa		13.56	□□□□□ -0.24
VPS29-208	ENST00000550267	SOWAHB	A6NEL2	793 aa		13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	ELL2	O00472	640 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	ALDH1A1	P00352	501 aa		13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	CCT4	P50991	539 aa	Known RBP	13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	CTSW	P56202	376 aa		13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	TXNRD3	Q86VQ6	643 aa		13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.55	□□□□□ -0.24
VPS29-208	ENST00000550267	MANSC4	A6NHS7	340 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	DPYSL4	O14531	572 aa		13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	INTS3	Q68E01	1043 aa	Known RBP	13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	KIAA0825	Q8IV33	1275 aa		13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	METTL22	Q9BUU2	404 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	COA1	Q9GZY4	146 aa		13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	GREM2	Q9H772	168 aa		13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	BSDC1	Q9NW68	430 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS29-208	ENST00000550267	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	BCAM	P50895	628 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	RALBP1	Q15311	655 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	NYAP1	Q6ZVC0	841 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	TTLL11	Q8NHH1	800 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	SLC10A4	Q96EP9	437 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	ZBED3	Q96IU2	234 aa	Predicted RBP	13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	CLMN	Q96JQ2	1002 aa		13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	ZFR	Q96KR1	1074 aa	Known RBP	13.53	□□□□□ -0.24
VPS29-208	ENST00000550267	KLRK1	P26718	216 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	INHBE	P58166	350 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	TTLL5	Q6EMB2	1281 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	CD99L2	Q8TCZ2	262 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	WNK4	Q96J92	1243 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	IRX2	Q9BZI1	471 aa	Predicted RBP	13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	DEFB129	Q9H1M3	183 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	PTPN22	Q9Y2R2	807 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	SSC5D	A1L4H1	1573 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	SPEF2	Q9C093	1822 aa		13.52	□□□□□ -0.25
VPS29-208	ENST00000550267	COL1A1	P02452	1464 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	IGKV5-2	P06315	115 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	ZNF853	P0CG23	659 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	ZBTB48	P10074	688 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	EN2	P19622	333 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	MMP14	P50281	582 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	GTF2I	P78347	998 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	WDR43	Q15061	677 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	ERO1A	Q96HE7	468 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	MAP3K2	Q9Y2U5	619 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	LEMD3	Q9Y2U8	911 aa		13.51	□□□□□ -0.25
VPS29-208	ENST00000550267	ZNF804B	A4D1E1	1349 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	TRIM6-TRIM34	B2RNG4	842 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	DDX58	O95786	925 aa	Known RBP	13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	FXR1	P51114	621 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	MAP3K11	Q16584	847 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	C8orf58	Q8NAV2	365 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	ADAMTS8	Q9UP79	889 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	PCDHAC2	Q9Y5I4	1007 aa		13.5	□□□□□ -0.25
VPS29-208	ENST00000550267	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	PPP1R12B	O60237	982 aa	Predicted RBP	13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	GJA5	P36382	358 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	IGHMBP2	P38935	993 aa	Known RBP	13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	CAP1	Q01518	475 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	CRHR2	Q13324	411 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	DLGAP5	Q15398	846 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	CWF19L2	Q2TBE0	894 aa	Known RBP	13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	ARMC5	Q96C12	935 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	EFCC1	Q9HA90	598 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	IFT57	Q9NWB7	429 aa		13.49	□□□□□ -0.25
VPS29-208	ENST00000550267	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.48	□□□□□ -0.25
VPS29-208	ENST00000550267	CLRN2	A0PK11	232 aa		13.48	□□□□□ -0.25
VPS29-208	ENST00000550267	PI4KAP2	A4QPH2	592 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms