RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 R3HDMLQ9H3Y0 253 aa16.69■□□□□ 0.26
CPSF6-204ENST00000547486 LRRFIP2Q9Y608 721 aaKnown RBP16.69■□□□□ 0.26
CPSF6-204ENST00000547486 TCP10L2B9ZVM9 353 aa16.68■□□□□ 0.26
CPSF6-204ENST00000547486 TBC1D22AQ8WUA7 517 aa16.68■□□□□ 0.26
CPSF6-204ENST00000547486 LPIN2Q92539 896 aa16.68■□□□□ 0.26
CPSF6-204ENST00000547486 KIF16BQ96L93 1317 aa16.68■□□□□ 0.26
CPSF6-204ENST00000547486 HDLBPQ00341 1268 aaKnown RBP16.67■□□□□ 0.26
CPSF6-204ENST00000547486 INTS3Q68E01 1043 aaKnown RBP16.67■□□□□ 0.26
CPSF6-204ENST00000547486 ARHGAP45Q92619 1136 aa16.67■□□□□ 0.26
CPSF6-204ENST00000547486 MRIQ9BWK5 157 aa16.67■□□□□ 0.26
CPSF6-204ENST00000547486 TMEM39BQ9GZU3 492 aa16.67■□□□□ 0.26
CPSF6-204ENST00000547486 PA2G4Q9UQ80 394 aaKnown RBP16.67■□□□□ 0.26
CPSF6-204ENST00000547486 TNNQ9UQP3 1299 aa16.67■□□□□ 0.26
CPSF6-204ENST00000547486 BCAR3O75815 825 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 CIAO1O76071 339 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 SLC5A1P13866 664 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 GJA5P36382 358 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 CACNB3P54284 484 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 SREBF2Q12772 1141 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 TNFAIP1Q13829 316 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 APOBEC3HQ6NTF7 200 aaKnown RBP16.66■□□□□ 0.26
CPSF6-204ENST00000547486 ZNF296Q8WUU4 475 aaPredicted RBP16.66■□□□□ 0.26
CPSF6-204ENST00000547486 TEKT1Q969V4 418 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 WNK4Q96J92 1243 aa16.66■□□□□ 0.26
CPSF6-204ENST00000547486 UNCXA6NJT0 531 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 GPR25O00155 361 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 IREB2P48200 963 aaKnown RBP16.65■□□□□ 0.26
CPSF6-204ENST00000547486 RGS19P49795 217 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 CTU1Q7Z7A3 348 aaKnown RBP16.65■□□□□ 0.26
CPSF6-204ENST00000547486 MIER1Q8N108 512 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 ZDHHC15Q96MV8 337 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 CEP126Q9P2H0 1117 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 FBXO3Q9UK99 471 aa16.65■□□□□ 0.26
CPSF6-204ENST00000547486 MANSC4A6NHS7 340 aaPredicted RBP16.64■□□□□ 0.25
CPSF6-204ENST00000547486 ZBTB48P10074 688 aaPredicted RBP16.64■□□□□ 0.25
CPSF6-204ENST00000547486 ATP2B3Q16720 1220 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 IFNL1Q8IU54 200 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 ANKRD13AQ8IZ07 590 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 CFHR5Q9BXR6 569 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 COPRSQ9NQ92 184 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 SUGT1Q9Y2Z0 365 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 AKAP11Q9UKA4 1901 aa16.64■□□□□ 0.25
CPSF6-204ENST00000547486 IGF2BP3O00425 579 aaKnown RBP eCLIP16.63■□□□□ 0.25
CPSF6-204ENST00000547486 IL15P40933 162 aaPredicted RBP16.63■□□□□ 0.25
CPSF6-204ENST00000547486 INHBEP58166 350 aa16.63■□□□□ 0.25
CPSF6-204ENST00000547486 HHIPL2Q6UWX4 724 aa16.63■□□□□ 0.25
CPSF6-204ENST00000547486 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.63■□□□□ 0.25
CPSF6-204ENST00000547486 HDAC5Q9UQL6 1122 aa16.63■□□□□ 0.25
CPSF6-204ENST00000547486 TRIM27P14373 513 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 ADORA1P30542 326 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 PHKA1P46020 1223 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 TNNI2P48788 182 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 NOM1Q5C9Z4 860 aaKnown RBP16.62■□□□□ 0.25
CPSF6-204ENST00000547486 WDR66Q8TBY9 1149 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 CNKSR2Q8WXI2 1034 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 PTPN18Q99952 460 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 ELP3Q9H9T3 547 aa16.62■□□□□ 0.25
CPSF6-204ENST00000547486 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.62■□□□□ 0.25
CPSF6-204ENST00000547486 ECM29Q5VYK3 1845 aa16.61■□□□□ 0.25
CPSF6-204ENST00000547486 GNAI3P08754 354 aa16.61■□□□□ 0.25
CPSF6-204ENST00000547486 TIMM10P62072 90 aa16.61■□□□□ 0.25
CPSF6-204ENST00000547486 FRAT1Q92837 279 aaPredicted RBP16.61■□□□□ 0.25
CPSF6-204ENST00000547486 OPTNQ96CV9 577 aa16.61■□□□□ 0.25
CPSF6-204ENST00000547486 IPO8O15397 1037 aaKnown RBP16.6■□□□□ 0.25
CPSF6-204ENST00000547486 SRGAP3O43295 1099 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 ALDH1A1P00352 501 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 PRDX5P30044 214 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 MAP3K9P80192 1104 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 VGLL4Q14135 290 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 DIXDC1Q155Q3 683 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 ATF7IPQ6VMQ6 1270 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.6■□□□□ 0.25
CPSF6-204ENST00000547486 CLUAP1Q96AJ1 413 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 MS4A4AQ96JQ5 239 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 MAST3O60307 1309 aa16.6■□□□□ 0.25
CPSF6-204ENST00000547486 TESPA1A2RU30 521 aaPredicted RBP16.59■□□□□ 0.25
CPSF6-204ENST00000547486 FKTNO75072 461 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 MLLT1Q03111 559 aaPredicted RBP16.59■□□□□ 0.25
CPSF6-204ENST00000547486 TFCP2Q12800 502 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 MTX1Q13505 466 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 FKBP1CQ5VVH2 108 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 CCDC102BQ68D86 513 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 FAM83AQ86UY5 434 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 GNL3LQ9NVN8 582 aaKnown RBP16.59■□□□□ 0.25
CPSF6-204ENST00000547486 DAGLAQ9Y4D2 1042 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 ARAP2Q8WZ64 1704 aa16.59■□□□□ 0.25
CPSF6-204ENST00000547486 CDC42EP5Q6NZY7 148 aa16.58■□□□□ 0.24
CPSF6-204ENST00000547486 TMOD2Q9NZR1 351 aa16.58■□□□□ 0.24
CPSF6-204ENST00000547486 DENND2AQ9ULE3 1009 aa16.58■□□□□ 0.24
CPSF6-204ENST00000547486 HPS5Q9UPZ3 1129 aa16.58■□□□□ 0.24
CPSF6-204ENST00000547486 SALL1Q9NSC2 1324 aa16.57■□□□□ 0.24
CPSF6-204ENST00000547486 LDHBP07195 334 aaKnown RBP16.57■□□□□ 0.24
CPSF6-204ENST00000547486 HNRNPUQ00839 825 aaKnown RBP eCLIP16.57■□□□□ 0.24
CPSF6-204ENST00000547486 NFIAQ12857 509 aa16.57■□□□□ 0.24
CPSF6-204ENST00000547486 PKN2Q16513 984 aaKnown RBP16.57■□□□□ 0.24
CPSF6-204ENST00000547486 DIEXFQ68CQ4 756 aaKnown RBP16.57■□□□□ 0.24
CPSF6-204ENST00000547486 MIGA2Q7L4E1 593 aa16.57■□□□□ 0.24
CPSF6-204ENST00000547486 ZKSCAN4Q969J2 545 aaPredicted RBP16.57■□□□□ 0.24
CPSF6-204ENST00000547486 PNMA6EA0A0J9YXQ4 647 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 A0A1B0GUL7 405 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms