RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SNAP23O00161 211 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 CCDC96Q2M329 555 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 TRIM75PA6NK02 468 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 ZSCAN12O43309 604 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 DNA2P51530 1060 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 BRAPQ7Z569 592 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 LLPHQ9BRT6 129 aaKnown RBP17.98■□□□□ 0.47
CUX1-211ENST00000546411 TFCP2L1Q9NZI6 479 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 IGSF3O75054 1194 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 TRMT1LQ7Z2T5 733 aaKnown RBP17.98■□□□□ 0.47
CUX1-211ENST00000546411 AK7Q96M32 723 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 DSCC1Q9BVC3 393 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 NRXN1Q9ULB1 1477 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 TMTC2Q8N394 836 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 ZBTB1Q9Y2K1 713 aa17.98■□□□□ 0.47
CUX1-211ENST00000546411 N4BP3O15049 544 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 PHKA1P46020 1223 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 KRT40Q6A162 431 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 DIS3L2Q8IYB7 885 aaKnown RBP17.97■□□□□ 0.47
CUX1-211ENST00000546411 CRACR2BQ8N4Y2 399 aaPredicted RBP17.97■□□□□ 0.47
CUX1-211ENST00000546411 ERBB4Q15303 1308 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 HEATR3Q7Z4Q2 680 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 KIAA1328Q86T90 577 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 KIF5BP33176 963 aa17.97■□□□□ 0.47
CUX1-211ENST00000546411 ZNF202O95125 648 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 PIK3C2BO00750 1634 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 LPIN2Q92539 896 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 KIF2AO00139 706 aaPredicted RBP17.96■□□□□ 0.47
CUX1-211ENST00000546411 TSPY3P0CV98 308 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 TSPY8P0CW00 308 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 BCAMP50895 628 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 SPATA5Q8NB90 893 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 STAMQ92783 540 aa17.96■□□□□ 0.47
CUX1-211ENST00000546411 V9GY48 417 aaPredicted RBP17.96■□□□□ 0.47
CUX1-211ENST00000546411 MCM7P33993 719 aa17.96■□□□□ 0.46
CUX1-211ENST00000546411 ZNF174Q15697 407 aa17.96■□□□□ 0.46
CUX1-211ENST00000546411 RRAGBQ5VZM2 374 aa17.96■□□□□ 0.46
CUX1-211ENST00000546411 OSBP2Q969R2 916 aa17.96■□□□□ 0.46
CUX1-211ENST00000546411 ZNF287Q9HBT7 754 aa17.96■□□□□ 0.46
CUX1-211ENST00000546411 RNF216Q9NWF9 866 aaPredicted RBP17.96■□□□□ 0.46
CUX1-211ENST00000546411 ADCY9O60503 1353 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 BAG3O95817 575 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 CTSWP56202 376 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 RUFY1Q96T51 708 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 PDIA3P30101 505 aaKnown RBP17.95■□□□□ 0.46
CUX1-211ENST00000546411 ZNF75DP51815 510 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 PICALMQ13492 652 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 GJB4Q9NTQ9 266 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 MAST3O60307 1309 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 GNPATO15228 680 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 FAM193AP78312 1265 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 TMCO3Q6UWJ1 677 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 SDR42E1Q8WUS8 393 aa17.95■□□□□ 0.46
CUX1-211ENST00000546411 BMP2KQ9NSY1 1161 aaPredicted RBP17.95■□□□□ 0.46
CUX1-211ENST00000546411 POLR3GO15318 223 aaPredicted RBP17.94■□□□□ 0.46
CUX1-211ENST00000546411 CASQ1P31415 396 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 ZBTB38Q8NAP3 1195 aaPredicted RBP17.94■□□□□ 0.46
CUX1-211ENST00000546411 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.94■□□□□ 0.465e-7■■□□□ 11.9
CUX1-211ENST00000546411 ATP10DQ9P241 1426 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 VWA3AA6NCI4 1184 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 PDE6AP16499 860 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 KRI1Q8N9T8 703 aaKnown RBP17.94■□□□□ 0.46
CUX1-211ENST00000546411 MAPK8IP1Q9UQF2 711 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 NPHP4O75161 1426 aaPredicted RBP17.94■□□□□ 0.46
CUX1-211ENST00000546411 POLR2DO15514 142 aaKnown RBP17.94■□□□□ 0.46
CUX1-211ENST00000546411 MYSM1Q5VVJ2 828 aa17.94■□□□□ 0.46
CUX1-211ENST00000546411 KIF5CO60282 957 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 GYG1P46976 350 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 PFKFB2O60825 505 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 FAM98CQ17RN3 349 aaKnown RBP17.93■□□□□ 0.46
CUX1-211ENST00000546411 TPTE2Q6XPS3 522 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 SYT10Q6XYQ8 523 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 CCDC150Q8NCX0 1101 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 TCP11L1Q9NUJ3 509 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 AATFQ9NY61 560 aaKnown RBP eCLIP17.93■□□□□ 0.463e-6■■■□□ 18.2
CUX1-211ENST00000546411 CCDC12Q8WUD4 166 aaPredicted RBP17.93■□□□□ 0.46
CUX1-211ENST00000546411 NRBP1Q9UHY1 535 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 KCNH3Q9ULD8 1083 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 M0R2C6 588 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 UBA5Q9GZZ9 404 aa17.93■□□□□ 0.46
CUX1-211ENST00000546411 ZHX1Q9UKY1 873 aaPredicted RBP17.93■□□□□ 0.46
CUX1-211ENST00000546411 ZNF76P36508 570 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 ZMYM1Q5SVZ6 1142 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 AXDND1Q5T1B0 1012 aaPredicted RBP17.92■□□□□ 0.46
CUX1-211ENST00000546411 PUS7LQ9H0K6 701 aaKnown RBP17.92■□□□□ 0.46
CUX1-211ENST00000546411 CCDC87Q9NVE4 849 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 WWC3Q9ULE0 1092 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 MROH2AA6NES4 1674 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 RIOK3O14730 519 aaKnown RBP17.92■□□□□ 0.46
CUX1-211ENST00000546411 TMEM87BQ96K49 555 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 USP31Q70CQ4 1352 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 GNAT2P19087 354 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 MTIF2P46199 727 aaKnown RBP17.92■□□□□ 0.46
CUX1-211ENST00000546411 KARSQ15046 597 aaKnown RBP17.92■□□□□ 0.46
CUX1-211ENST00000546411 SEC31BQ9NQW1 1179 aa17.92■□□□□ 0.46
CUX1-211ENST00000546411 UBAP1LF5GYI3 381 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 LDHCP07864 332 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 SAP30BPQ9UHR5 308 aaKnown RBP17.91■□□□□ 0.46
CUX1-211ENST00000546411 PAXBP1Q9Y5B6 917 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 PCCAP05165 728 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms