RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 CCDC73Q6ZRK6 1079 aa20.79■□□□□ 0.92
PTPN6-222ENST00000543744 LUZP1Q86V48 1076 aa20.79■□□□□ 0.92
PTPN6-222ENST00000543744 FBXO18Q8NFZ0 1043 aa20.79■□□□□ 0.92
PTPN6-222ENST00000543744 MYH15Q9Y2K3 1946 aa20.79■□□□□ 0.92
PTPN6-222ENST00000543744 SNAP23O00161 211 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 ME1P48163 572 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 ALX1Q15699 326 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 MAGEB6Q8N7X4 407 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 ZNF830Q96NB3 372 aaPredicted RBP20.78■□□□□ 0.92
PTPN6-222ENST00000543744 CBX8Q9HC52 389 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 ARAP2Q8WZ64 1704 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 SPATA31A5Q5VU36 1347 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 SPATA31A7Q8IWB4 1347 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 CTAGE5O15320 804 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 NTSR2O95665 410 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 OTUD7BQ6GQQ9 843 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 CYB5R4Q7L1T6 521 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 DENND2AQ9ULE3 1009 aa20.78■□□□□ 0.92
PTPN6-222ENST00000543744 RTL9Q8NET4 1388 aa20.77■□□□□ 0.92
PTPN6-222ENST00000543744 PATL2C9JE40 543 aaKnown RBP20.77■□□□□ 0.92
PTPN6-222ENST00000543744 TPM2P07951 284 aa20.77■□□□□ 0.92
PTPN6-222ENST00000543744 RTEL1Q9NZ71 1219 aa20.77■□□□□ 0.92
PTPN6-222ENST00000543744 NRAPQ86VF7 1730 aa20.77■□□□□ 0.92
PTPN6-222ENST00000543744 SH2B2O14492 632 aaPredicted RBP20.77■□□□□ 0.91
PTPN6-222ENST00000543744 CAVIN2O95810 425 aa20.77■□□□□ 0.91
PTPN6-222ENST00000543744 GOLPH3LQ9H4A5 285 aa20.77■□□□□ 0.91
PTPN6-222ENST00000543744 TTC12Q9H892 705 aaPredicted RBP20.77■□□□□ 0.91
PTPN6-222ENST00000543744 ZMYM6O95789 1325 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 DDX60Q8IY21 1712 aaKnown RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 NUTM2BA6NNL0 878 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 NUTM2EB1AL46 878 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 B4E1Z4 1266 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 MBD4O95243 580 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 FAM160A1Q05DH4 1040 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 BRAPQ7Z569 592 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 NUTM2AQ8IVF1 878 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 IFNL3Q8IZI9 196 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 SMARCC1Q92922 1105 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 TMEM87BQ96K49 555 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 ZNF652Q9Y2D9 606 aa20.76■□□□□ 0.91
PTPN6-222ENST00000543744 MYO5AQ9Y4I1 1855 aaKnown RBP20.76■□□□□ 0.91
PTPN6-222ENST00000543744 KINO60870 393 aaKnown RBP20.75■□□□□ 0.91
PTPN6-222ENST00000543744 ZNF165P49910 485 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 METAP2P50579 478 aaKnown RBP eCLIP20.75■□□□□ 0.91
PTPN6-222ENST00000543744 TERF1P54274 439 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 SNW1Q13573 536 aaKnown RBP20.75■□□□□ 0.91
PTPN6-222ENST00000543744 BARGINQ6ZT62 677 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 NAPBQ9H115 298 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 DNAJC25Q9H1X3 360 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 RREB1Q92766 1687 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 GOLGA6L6A8MZA4 724 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 CDKL5O76039 1030 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 POLR3DP05423 398 aaPredicted RBP20.75■□□□□ 0.91
PTPN6-222ENST00000543744 TPM3P06753 285 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 BCAMP50895 628 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 FSIP1Q8NA03 581 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 NKX2-3Q8TAU0 364 aa20.75■□□□□ 0.91
PTPN6-222ENST00000543744 R3HCC1Q9Y3T6 440 aaKnown RBP20.75■□□□□ 0.91
PTPN6-222ENST00000543744 RGS22Q8NE09 1264 aa20.74■□□□□ 0.91
PTPN6-222ENST00000543744 ENGASEQ8NFI3 743 aa20.74■□□□□ 0.91
PTPN6-222ENST00000543744 ARMT1Q9H993 441 aa20.74■□□□□ 0.91
PTPN6-222ENST00000543744 EPB41L4AQ9HCS5 686 aaPredicted RBP20.74■□□□□ 0.91
PTPN6-222ENST00000543744 PCDHA7Q9UN72 937 aa20.74■□□□□ 0.91
PTPN6-222ENST00000543744 NEDD4P46934 1319 aa20.74■□□□□ 0.91
PTPN6-222ENST00000543744 CHRNDQ07001 517 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 STK38Q15208 465 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 SF3A1Q15459 793 aaKnown RBP20.73■□□□□ 0.91
PTPN6-222ENST00000543744 CPLX2Q6PUV4 134 aaKnown RBP20.73■□□□□ 0.91
PTPN6-222ENST00000543744 APOA5Q6Q788 366 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 TDRD7Q8NHU6 1098 aaKnown RBP20.73■□□□□ 0.91
PTPN6-222ENST00000543744 PIBF1Q8WXW3 757 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 PHLPP1O60346 1717 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 ADALQ6DHV7 355 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 LINC00301Q8NCQ3 95 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 KCNG4Q8TDN1 519 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 IGDCC4Q8TDY8 1250 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 MRPS27Q92552 414 aaKnown RBP20.73■□□□□ 0.91
PTPN6-222ENST00000543744 POLR3EQ9NVU0 708 aa20.73■□□□□ 0.91
PTPN6-222ENST00000543744 YEATS4O95619 227 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 GNAT2P19087 354 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 MYSM1Q5VVJ2 828 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 SYNE3Q6ZMZ3 975 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 NFXL1Q6ZNB6 911 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 SPC24Q8NBT2 197 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 CDC5LQ99459 802 aaKnown RBP20.72■□□□□ 0.91
PTPN6-222ENST00000543744 GJB4Q9NTQ9 266 aa20.72■□□□□ 0.91
PTPN6-222ENST00000543744 A0A1W2PQ27 194 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 A0A1W2PQ64 194 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 A0A1W2PQD8 194 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 GSG1L2A8MUP6 293 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 ZBTB43O43298 467 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 KCNQ2O43526 872 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 KIF23Q02241 960 aaPredicted RBP20.71■□□□□ 0.91
PTPN6-222ENST00000543744 TMEM67Q5HYA8 995 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 CLEC4GQ6UXB4 293 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 NACAP1Q9BZK3 213 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 CNNM2Q9H8M5 875 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 CLIC4Q9Y696 253 aa20.71■□□□□ 0.91
PTPN6-222ENST00000543744 CICQ96RK0 1608 aaPredicted RBP20.71■□□□□ 0.91
PTPN6-222ENST00000543744 MYH14Q7Z406 1995 aaKnown RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms