RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CCDC30Q5VVM6 783 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 AMIGO3Q86WK7 504 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 TSPYL6Q8N831 410 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 ZNF784Q8NCA9 323 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 YTHDC1Q96MU7 727 aaKnown RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 ERBB4Q15303 1308 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 CICQ96RK0 1608 aaPredicted RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 COL15A1P39059 1388 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 EIF5P55010 431 aaKnown RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 C4orf48Q5BLP8 95 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 NBPF10Q6P3W6 841 aaKnown RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 NBPF15Q8N660 670 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 EHBP1Q8NDI1 1231 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 SLC16A10Q8TF71 515 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 STK31Q9BXU1 1019 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 PDGFDQ9GZP0 370 aaPredicted RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 SPON1Q9HCB6 807 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 DBF4Q9UBU7 674 aaPredicted RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 PPME1Q9Y570 386 aa6.48□□□□□ -1.37
CLIP1-217ENST00000543205 COL5A3P25940 1745 aaPredicted RBP6.48□□□□□ -1.37
CLIP1-217ENST00000543205 VAMP4O75379 141 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 ZBTB7AO95365 584 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 ERCC3P19447 782 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 ERFEQ4G0M1 354 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 SPRYD7Q5W111 196 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 DZIP3Q86Y13 1208 aaKnown RBP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 SLC10A4Q96EP9 437 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 DDX21Q9NR30 783 aaKnown RBP eCLIP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 CHPF2Q9P2E5 772 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 TFIP11Q9UBB9 837 aaKnown RBP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 ANXA1P04083 346 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 C1QTNF8P60827 252 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 AIMP1Q12904 312 aaKnown RBP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 USPL1Q5W0Q7 1092 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 KIF6Q6ZMV9 814 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 NPAS4Q8IUM7 802 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 TRMT2AQ8IZ69 625 aaKnown RBP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 GPATCH3Q96I76 525 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 MTFR1LQ9H019 292 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 HYPKQ9NX55 129 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 SRP68Q9UHB9 627 aaKnown RBP6.47□□□□□ -1.37
CLIP1-217ENST00000543205 NARFQ9UHQ1 456 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 SUGT1Q9Y2Z0 365 aa6.47□□□□□ -1.37
CLIP1-217ENST00000543205 USP42Q9H9J4 1324 aaKnown RBP6.46□□□□□ -1.37
CLIP1-217ENST00000543205 TCERG1O14776 1098 aaKnown RBP6.46□□□□□ -1.38
CLIP1-217ENST00000543205 VARSP26640 1264 aaKnown RBP6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PRR20EP86478 221 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PRR20CP86479 221 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PRR20DP86480 221 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PRR20BP86481 221 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PRR20AP86496 221 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 PROSER3Q2NL68 480 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 ZNF697Q5TEC3 545 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 MSL1Q68DK7 614 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 NLGN1Q8N2Q7 840 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 FAM174AQ8TBP5 190 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 C1QTNF2Q9BXJ5 285 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 ALG2Q9H553 416 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 MYH14Q7Z406 1995 aaKnown RBP6.46□□□□□ -1.38
CLIP1-217ENST00000543205 LAMB4A4D0S4 1761 aa6.46□□□□□ -1.38
CLIP1-217ENST00000543205 POTECB2RU33 542 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 CT47B1P0C2W7 299 aaPredicted RBP6.45□□□□□ -1.38
CLIP1-217ENST00000543205 GYS1P13807 737 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 POLD1P28340 1107 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 COPS6Q7L5N1 327 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 XAGE3Q8WTP9 111 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 ZNF652Q9Y2D9 606 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 UBR3Q6ZT12 1888 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 CAMTA2O94983 1202 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 SF3A1Q15459 793 aaKnown RBP6.45□□□□□ -1.38
CLIP1-217ENST00000543205 TTLL7Q6ZT98 887 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 QSER1Q2KHR3 1735 aa6.45□□□□□ -1.38
CLIP1-217ENST00000543205 ANKRD33BA6NCL7 494 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 FAM181BA6NEQ2 426 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 ERVV-1B6SEH8 477 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 DDX58O95786 925 aaKnown RBP6.44□□□□□ -1.38
CLIP1-217ENST00000543205 MCCD1P59942 119 aaPredicted RBP6.44□□□□□ -1.38
CLIP1-217ENST00000543205 CLEC4GQ6UXB4 293 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 BICDL1Q6ZP65 573 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 LRP10Q7Z4F1 713 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 ZNF598Q86UK7 904 aaKnown RBP6.44□□□□□ -1.38
CLIP1-217ENST00000543205 STK32AQ8WU08 396 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 DNAJC2Q99543 621 aaKnown RBP6.44□□□□□ -1.38
CLIP1-217ENST00000543205 PHAXQ9H814 394 aaKnown RBP6.44□□□□□ -1.38
CLIP1-217ENST00000543205 MAP3K15Q6ZN16 1313 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 TUBGCP6Q96RT7 1819 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 CASZ1Q86V15 1759 aa6.44□□□□□ -1.38
CLIP1-217ENST00000543205 MMP10P09238 476 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 SERPINB4P48594 390 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 MARSP56192 900 aaKnown RBP6.43□□□□□ -1.38
CLIP1-217ENST00000543205 FOXC1Q12948 553 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 TMEM164Q5U3C3 297 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 TRMT44Q8IYL2 757 aaKnown RBP6.43□□□□□ -1.38
CLIP1-217ENST00000543205 PLBD2Q8NHP8 589 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 ZMIZ1Q9ULJ6 1067 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.43□□□□□ -1.38
CLIP1-217ENST00000543205 PARP3Q9Y6F1 533 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 WNT7AO00755 349 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 VAMP1P23763 118 aa6.43□□□□□ -1.38
CLIP1-217ENST00000543205 ARID5BQ14865 1188 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms