RNA–Protein interactions for RNA: ENST00000541562.5

VARS2-211, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2 BASIC

Gene VARS2, Length 3,566 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-211ENST00000541562 SPTLC2O15270 562 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 GRIN1Q05586 938 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 SNW1Q13573 536 aaKnown RBP17.48■□□□□ 0.39
VARS2-211ENST00000541562 KLHL10Q6JEL2 608 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 CCDC69A6NI79 296 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 TRMT44Q8IYL2 757 aaKnown RBP17.48■□□□□ 0.39
VARS2-211ENST00000541562 NAPBQ9H115 298 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 NEDD4P46934 1319 aa17.48■□□□□ 0.39
VARS2-211ENST00000541562 CACNA1FO60840 1977 aa17.47■□□□□ 0.39
VARS2-211ENST00000541562 WDHD1O75717 1129 aaPredicted RBP17.47■□□□□ 0.39
VARS2-211ENST00000541562 NLRP10Q86W26 655 aa17.47■□□□□ 0.39
VARS2-211ENST00000541562 MYRIPQ8NFW9 859 aa17.47■□□□□ 0.39
VARS2-211ENST00000541562 MRPS27Q92552 414 aaKnown RBP17.47■□□□□ 0.39
VARS2-211ENST00000541562 MED1Q15648 1581 aaPredicted RBP17.47■□□□□ 0.39
VARS2-211ENST00000541562 PIP4K2BP78356 416 aa17.47■□□□□ 0.39
VARS2-211ENST00000541562 GOLGA8AA7E2F4 631 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 GYG1P46976 350 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 GPIHBP1Q8IV16 184 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 DSCC1Q9BVC3 393 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 ZSCAN16Q9H4T2 348 aaPredicted RBP17.46■□□□□ 0.39
VARS2-211ENST00000541562 HPS5Q9UPZ3 1129 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 NR5A1Q13285 461 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 EP400Q96L91 3159 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 RAI14Q9P0K7 980 aa17.46■□□□□ 0.39
VARS2-211ENST00000541562 BTBD18B2RXH4 712 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 EPB41L2O43491 1005 aaKnown RBP17.45■□□□□ 0.38
VARS2-211ENST00000541562 ZNF202O95125 648 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 SLC3A2P08195 630 aaKnown RBP17.45■□□□□ 0.38
VARS2-211ENST00000541562 PDE6AP16499 860 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 APPBP2Q92624 585 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 XPO4Q9C0E2 1151 aaKnown RBP17.45■□□□□ 0.38
VARS2-211ENST00000541562 FAM205CA6NFA0 338 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 KCNQ2O43526 872 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 HMGN5P82970 282 aaKnown RBP17.45■□□□□ 0.38
VARS2-211ENST00000541562 IL17RAQ96F46 866 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 EEF2KMTQ96G04 330 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 AKAP2Q9Y2D5 859 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 SH3TC1Q8TE82 1336 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 ATP6V1AP38606 617 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 FAM160A1Q05DH4 1040 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 STX1AQ16623 288 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 MYSM1Q5VVJ2 828 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 KRT40Q6A162 431 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 SMARCC2Q8TAQ2 1214 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 CPLX3Q8WVH0 158 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 NCAPD2Q15021 1401 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 C5P01031 1676 aa17.45■□□□□ 0.38
VARS2-211ENST00000541562 DYNC1I1O14576 645 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 HMGB1P09429 215 aaKnown RBP17.44■□□□□ 0.38
VARS2-211ENST00000541562 STX17P56962 302 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 VPS37DQ86XT2 251 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 NBPF3Q9H094 633 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 PFKFB1P16118 471 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 CTSWP56202 376 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 HOMER1Q86YM7 354 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 CEP57L1Q8IYX8 460 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 ZBTB38Q8NAP3 1195 aaPredicted RBP17.44■□□□□ 0.38
VARS2-211ENST00000541562 ZSWIM5Q9P217 1185 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 SLC4A4Q9Y6R1 1079 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 KDM3BQ7LBC6 1761 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 SERPINC1P01008 464 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 RASGRF1Q13972 1273 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 SUSD4Q5VX71 490 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 RCOR1Q9UKL0 485 aa17.44■□□□□ 0.38
VARS2-211ENST00000541562 LCORLQ8N3X6 602 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 CTNNA3Q9UI47 895 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 NIP7Q9Y221 180 aaKnown RBP eCLIP17.43■□□□□ 0.38
VARS2-211ENST00000541562 MST1RQ04912 1400 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 RANBP6O60518 1105 aaKnown RBP17.43■□□□□ 0.38
VARS2-211ENST00000541562 AFMP43652 599 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 IQCB1Q15051 598 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 DHX40Q8IX18 779 aaKnown RBP17.43■□□□□ 0.38
VARS2-211ENST00000541562 PDCL2Q8N4E4 241 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 LINC00301Q8NCQ3 95 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 FBXO18Q8NFZ0 1043 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.43■□□□□ 0.385e-7■■□□□ 12.2
VARS2-211ENST00000541562 TUBGCP6Q96RT7 1819 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 MROH7-TTC4A0A0A0MT08 1334 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 IARSP41252 1262 aaKnown RBP17.43■□□□□ 0.38
VARS2-211ENST00000541562 USP49Q70CQ1 688 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 DPF2Q92785 391 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 ISCA1Q9BUE6 129 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.43■□□□□ 0.382e-8■■■■■ 49.9
VARS2-211ENST00000541562 TFCP2L1Q9NZI6 479 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 TACC3Q9Y6A5 838 aa17.43■□□□□ 0.38
VARS2-211ENST00000541562 CHD2O14647 1828 aaKnown RBP17.42■□□□□ 0.38
VARS2-211ENST00000541562 EXOC5O00471 708 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 ZBTB43O43298 467 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 TSGA10IPQ3SY00 556 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 CFAP100Q494V2 611 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 SLC12A7Q9Y666 1083 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 ELP1O95163 1332 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 ERVV-2B6SEH9 535 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 DYNLL1P63167 89 aaKnown RBP17.42■□□□□ 0.38
VARS2-211ENST00000541562 TRIM29Q14134 588 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 CCAR2Q8N163 923 aaKnown RBP17.42■□□□□ 0.38
VARS2-211ENST00000541562 UIMC1Q96RL1 719 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 UBN2Q6ZU65 1347 aa17.42■□□□□ 0.38
VARS2-211ENST00000541562 NOM1Q5C9Z4 860 aaKnown RBP17.41■□□□□ 0.38
VARS2-211ENST00000541562 ANO1Q5XXA6 986 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms