RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 USP17L8P0C7I0 530 aa15.88■□□□□ 0.13
CCDC42-202ENST00000539522 CDK5RAP2Q96SN8 1893 aa15.88■□□□□ 0.13
CCDC42-202ENST00000539522 TTC41PQ6P2S7 1318 aa15.88■□□□□ 0.13
CCDC42-202ENST00000539522 MYO3BQ8WXR4 1341 aa15.88■□□□□ 0.13
CCDC42-202ENST00000539522 POLR2AP24928 1970 aaKnown RBP15.87■□□□□ 0.13
CCDC42-202ENST00000539522 EPHX2P34913 555 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 DIXDC1Q155Q3 683 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 SLFNL1Q499Z3 407 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 ADGRA1Q86SQ6 560 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 TBC1D22AQ8WUA7 517 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 OSBPL3Q9H4L5 887 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 HACL1Q9UJ83 578 aa15.87■□□□□ 0.13
CCDC42-202ENST00000539522 TTF2Q9UNY4 1162 aaKnown RBP15.87■□□□□ 0.13
CCDC42-202ENST00000539522 TBC1D10BQ4KMP7 808 aaPredicted RBP15.86■□□□□ 0.13
CCDC42-202ENST00000539522 NSUN4Q96CB9 384 aaKnown RBP15.86■□□□□ 0.13
CCDC42-202ENST00000539522 MYOZ2Q9NPC6 264 aa15.86■□□□□ 0.13
CCDC42-202ENST00000539522 GOLIM4O00461 696 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 MAP4K4O95819 1239 aaPredicted RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 VEGFAP15692 232 aaPredicted RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 MECOMQ03112 1051 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 NBPF9Q3BBW0 867 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 MTMR14Q8NCE2 650 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 PRMT6Q96LA8 375 aaPredicted RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 DNAJC2Q99543 621 aaKnown RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 GPBP1L1Q9HC44 474 aaPredicted RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 ADARB2Q9NS39 739 aaKnown RBP15.85■□□□□ 0.13
CCDC42-202ENST00000539522 ABCF2Q9UG63 623 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 SUGT1Q9Y2Z0 365 aa15.85■□□□□ 0.13
CCDC42-202ENST00000539522 WNT10BO00744 389 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 GSPT1P15170 499 aaKnown RBP15.84■□□□□ 0.13
CCDC42-202ENST00000539522 CRKP46108 304 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 CFAP100Q494V2 611 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 APOBEC3HQ6NTF7 200 aaKnown RBP15.84■□□□□ 0.13
CCDC42-202ENST00000539522 PAG1Q9NWQ8 432 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 PGAP2Q9UHJ9 254 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 GAKO14976 1311 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 FOCADQ5VW36 1801 aa15.84■□□□□ 0.13
CCDC42-202ENST00000539522 TCRBV5S4A2TA0A5A2 114 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 IQCA1LA6NCM1 817 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 LDHBP07195 334 aaKnown RBP15.83■□□□□ 0.12
CCDC42-202ENST00000539522 KIF4BQ2VIQ3 1234 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 RBM26Q5T8P6 1007 aaKnown RBP15.83■□□□□ 0.12
CCDC42-202ENST00000539522 DLK2Q6UY11 383 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 MRIQ9BWK5 157 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 SERPINA10Q9UK55 444 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 SCAF8Q9UPN6 1271 aaKnown RBP15.83■□□□□ 0.12
CCDC42-202ENST00000539522 DAGLAQ9Y4D2 1042 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 AK9Q5TCS8 1911 aa15.83■□□□□ 0.12
CCDC42-202ENST00000539522 SPDYE2BA6NHP3 402 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 H7C1D1 291 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 GLRX3O76003 335 aaKnown RBP15.82■□□□□ 0.12
CCDC42-202ENST00000539522 SPDYE6P0CI01 402 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 LMOD1P29536 600 aaPredicted RBP15.82■□□□□ 0.12
CCDC42-202ENST00000539522 HDLBPQ00341 1268 aaKnown RBP15.82■□□□□ 0.12
CCDC42-202ENST00000539522 USP50Q70EL3 339 aaPredicted RBP15.82■□□□□ 0.12
CCDC42-202ENST00000539522 ERICH6Q7L0X2 663 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 FAM163AQ96GL9 167 aaPredicted RBP15.82■□□□□ 0.12
CCDC42-202ENST00000539522 ZDHHC15Q96MV8 337 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 RFX7Q2KHR2 1363 aa15.82■□□□□ 0.12
CCDC42-202ENST00000539522 HHIPL2Q6UWX4 724 aa15.81■□□□□ 0.12
CCDC42-202ENST00000539522 DDX60LQ5H9U9 1706 aaKnown RBP15.8■□□□□ 0.12
CCDC42-202ENST00000539522 MROH7-TTC4A0A0A0MT08 1334 aa15.8■□□□□ 0.12
CCDC42-202ENST00000539522 FMR1Q06787 632 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC42-202ENST00000539522 ZGPATQ8N5A5 531 aaKnown RBP15.8■□□□□ 0.12
CCDC42-202ENST00000539522 GPATCH3Q96I76 525 aa15.8■□□□□ 0.12
CCDC42-202ENST00000539522 RAI14Q9P0K7 980 aa15.8■□□□□ 0.12
CCDC42-202ENST00000539522 LRP2BPQ9P2M1 347 aa15.8■□□□□ 0.12
CCDC42-202ENST00000539522 GPR75-ASB3A0A0A6YYF3 556 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 IDH1O75874 414 aaKnown RBP15.79■□□□□ 0.12
CCDC42-202ENST00000539522 PDE6AP16499 860 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 RHBDL3P58872 404 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 EAPPQ56P03 285 aaPredicted RBP15.79■□□□□ 0.12
CCDC42-202ENST00000539522 TTC22Q5TAA0 569 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 SPTY2D1Q68D10 685 aaPredicted RBP15.79■□□□□ 0.12
CCDC42-202ENST00000539522 OGFOD1Q8N543 542 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 MAGEB6Q8N7X4 407 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 KBTBD3Q8NAB2 608 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 TEKT1Q969V4 418 aa15.79■□□□□ 0.12
CCDC42-202ENST00000539522 TDRD3Q9H7E2 651 aaKnown RBP15.79■□□□□ 0.12
CCDC42-202ENST00000539522 CNTNAP1P78357 1384 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 SIPA1L1O43166 1804 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 ERC2O15083 957 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 ADD2P35612 726 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 MMP14P50281 582 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 CACNB3P54284 484 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 DLGAP5Q15398 846 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 SPDYE2Q495Y8 402 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 ANGEL2Q5VTE6 544 aaKnown RBP15.78■□□□□ 0.12
CCDC42-202ENST00000539522 MAP1SQ66K74 1059 aaPredicted RBP15.78■□□□□ 0.12
CCDC42-202ENST00000539522 CDC42EP5Q6NZY7 148 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 PNMA8AQ86V59 439 aaPredicted RBP15.78■□□□□ 0.12
CCDC42-202ENST00000539522 DZIP1Q86YF9 867 aaKnown RBP15.78■□□□□ 0.12
CCDC42-202ENST00000539522 GGA3Q9NZ52 723 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 HDAC9Q9UKV0 1011 aa15.78■□□□□ 0.12
CCDC42-202ENST00000539522 MAST3O60307 1309 aa15.77■□□□□ 0.12
CCDC42-202ENST00000539522 ZNF532Q9HCE3 1301 aa15.77■□□□□ 0.12
CCDC42-202ENST00000539522 CLRN2A0PK11 232 aa15.77■□□□□ 0.12
CCDC42-202ENST00000539522 ITGBL1O95965 494 aaPredicted RBP15.77■□□□□ 0.12
CCDC42-202ENST00000539522 DYNLL1P63167 89 aaKnown RBP15.77■□□□□ 0.12
CCDC42-202ENST00000539522 NFIAQ12857 509 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms