RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RABL6Q3YEC7 729 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-237ENST00000539504 AIFM3Q96NN9 605 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 APPP05067 770 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 IL15P40933 162 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-237ENST00000539504 CCDC93Q567U6 631 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 JMYQ8N9B5 988 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 ORAI2Q96SN7 254 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 CEP126Q9P2H0 1117 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 CASQ1P31415 396 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 LRRFIP1Q32MZ4 808 aaKnown RBP12.98□□□□□ -0.33
SYNE1-237ENST00000539504 CCDC34Q96HJ3 373 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 ALG1Q9BT22 464 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 TMEM232C9JQI7 657 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 WDHD1O75717 1129 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-237ENST00000539504 KIF23Q02241 960 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-237ENST00000539504 CCDC158Q5M9N0 1113 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 CNNM3Q8NE01 707 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 NCOA7Q8NI08 942 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 ZBTB9Q96C00 473 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 FANCLQ9NW38 375 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 MED1Q15648 1581 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-237ENST00000539504 ZNF213O14771 459 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 PLA2G4AP47712 749 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 TAF7LQ5H9L4 462 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 CPLX2Q6PUV4 134 aaKnown RBP12.97□□□□□ -0.33
SYNE1-237ENST00000539504 CLIC6Q96NY7 704 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 SRRTQ9BXP5 876 aaKnown RBP12.97□□□□□ -0.33
SYNE1-237ENST00000539504 ZSWIM4Q9H7M6 989 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 IKBKBO14920 756 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 FGAP02671 866 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 TRIM29Q14134 588 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 NEK11Q8NG66 645 aa12.97□□□□□ -0.33
SYNE1-237ENST00000539504 PHLPP2Q6ZVD8 1323 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 AXDND1Q5T1B0 1012 aaPredicted RBP12.96□□□□□ -0.33
SYNE1-237ENST00000539504 NFXL1Q6ZNB6 911 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 ZBTB3Q9H5J0 574 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 FAM53CQ9NYF3 392 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 SPECC1Q5M775 1068 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 ATG9AQ7Z3C6 839 aa12.96□□□□□ -0.33
SYNE1-237ENST00000539504 PUS3Q9BZE2 481 aaKnown RBP12.96□□□□□ -0.33
SYNE1-237ENST00000539504 MROH7-TTC4A0A0A0MT08 1334 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 PALLDQ8WX93 1383 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 EYA2O00167 538 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 CABP4P57796 275 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 SLC39A14Q15043 492 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 CCDC102BQ68D86 513 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 MICU3Q86XE3 530 aa12.96□□□□□ -0.34
SYNE1-237ENST00000539504 CWC25Q9NXE8 425 aaPredicted RBP12.96□□□□□ -0.34
SYNE1-237ENST00000539504 TPM1P09493 284 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 KCNJ6P48051 423 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 HNRNPH2P55795 449 aaKnown RBP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 VPS37DQ86XT2 251 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 PLBD2Q8NHP8 589 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 PHKBQ93100 1093 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 ZCCHC17Q9NP64 241 aaKnown RBP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 PPP2R2CQ9Y2T4 447 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 VGLL3A8MV65 326 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 CYP2C19P33261 490 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 METAP2P50579 478 aaKnown RBP eCLIP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 KARSQ15046 597 aaKnown RBP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 BAG1Q99933 345 aaPredicted RBP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 KDM3BQ7LBC6 1761 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 EFCAB8A8MWE9 144 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 TADA3O75528 432 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 ATP2B1P20020 1258 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 IRX5P78411 483 aaPredicted RBP12.95□□□□□ -0.34
SYNE1-237ENST00000539504 GPS2Q13227 327 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 IFNL2Q8IZJ0 200 aa12.95□□□□□ -0.34
SYNE1-237ENST00000539504 ARHGAP6O43182 974 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 PHKG2P15735 406 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 ADKP55263 362 aaKnown RBP12.94□□□□□ -0.34
SYNE1-237ENST00000539504 KRT40Q6A162 431 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 TRIM65Q6PJ69 517 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 VSTM4Q8IW00 320 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 HPS5Q9UPZ3 1129 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 OAS2P29728 719 aaKnown RBP12.94□□□□□ -0.34
SYNE1-237ENST00000539504 PPP2R3AQ06190 1150 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 CREBRFQ8IUR6 639 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 FOXO4P98177 505 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 CCDC57Q2TAC2 916 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 REXO1L1PQ8IX06 675 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 DESI2Q9BSY9 194 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 ARFGAP3Q9NP61 516 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 PCDHA5Q9Y5H7 936 aa12.94□□□□□ -0.34
SYNE1-237ENST00000539504 ADORA1P30542 326 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 SHC4Q6S5L8 630 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 TTLL7Q6ZT98 887 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 CCDC12Q8WUD4 166 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-237ENST00000539504 PARP3Q9Y6F1 533 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 WDR24Q96S15 920 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 MPHOSPH8Q99549 860 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 TMEM51Q9NW97 253 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 KCNH3Q9ULD8 1083 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 NEDD4P46934 1319 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 CDKL5O76039 1030 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 LONRF3Q496Y0 759 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 PI16Q6UXB8 463 aa12.93□□□□□ -0.34
SYNE1-237ENST00000539504 MB21D2Q8IYB1 491 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-237ENST00000539504 TRMT44Q8IYL2 757 aaKnown RBP12.93□□□□□ -0.34
SYNE1-237ENST00000539504 PUS7LQ9H0K6 701 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms