RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 CDC5LQ99459 802 aaKnown RBP12.39□□□□□ -0.43
NPIPB3-209ENST00000538439 PCDHGC3Q9UN70 934 aa12.39□□□□□ -0.43
NPIPB3-209ENST00000538439 RTL9Q8NET4 1388 aa12.39□□□□□ -0.43
NPIPB3-209ENST00000538439 ABCC12Q96J65 1359 aa12.39□□□□□ -0.43
NPIPB3-209ENST00000538439 SMARCA5O60264 1052 aaPredicted RBP12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 IL15P40933 162 aaPredicted RBP12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 EMP3P54852 163 aa12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 LDHAL6AQ6ZMR3 332 aa12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 CCDC24Q8N4L8 307 aa12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 HELBQ8NG08 1087 aaPredicted RBP12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 ZNF594Q96JF6 807 aaPredicted RBP12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 MPHOSPH8Q99549 860 aa12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 BCL11AQ9H165 835 aa12.38□□□□□ -0.43
NPIPB3-209ENST00000538439 RIC1Q4ADV7 1423 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 GUCA2AQ02747 115 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 DDX46Q7L014 1031 aaKnown RBP12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 SAMD7Q7Z3H4 446 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 ANKRD18AQ8IVF6 992 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 BRIP1Q9BX63 1249 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 IL1RAPL2Q9NP60 686 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 CNNM1Q9NRU3 951 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 CEP126Q9P2H0 1117 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 NDUFB9Q9Y6M9 179 aa12.37□□□□□ -0.43
NPIPB3-209ENST00000538439 LAMB2P55268 1798 aa12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 SASH1O94885 1247 aa12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 CFHP08603 1231 aa12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 RPGRQ92834 1020 aaKnown RBP12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 SEC31BQ9NQW1 1179 aa12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 MYH3P11055 1940 aa12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 DDX60Q8IY21 1712 aaKnown RBP12.36□□□□□ -0.43
NPIPB3-209ENST00000538439 IFIT2P09913 472 aaKnown RBP12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 YBX3P16989 372 aaKnown RBP eCLIP12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 PDE6BP35913 854 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 FUT2Q10981 343 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 LRRC24Q50LG9 513 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 ATG9AQ7Z3C6 839 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 SKAP1Q86WV1 359 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 ZNF687Q8N1G0 1237 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 NLGN2Q8NFZ4 835 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 HLA-CQ95604 372 aa12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 RBM17Q96I25 401 aaKnown RBP12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 PUS3Q9BZE2 481 aaKnown RBP12.35□□□□□ -0.43
NPIPB3-209ENST00000538439 RNF40O75150 1001 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 POLD1P28340 1107 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 RPS8P62241 208 aaKnown RBP12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 TFCP2Q12800 502 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 KMT5BQ4FZB7 885 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 METTL24Q5JXM2 366 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 C16orf71Q8IYS4 520 aaPredicted RBP12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 GPR108Q9NPR9 543 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 AKAP2Q9Y2D5 859 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 RIPOR2Q9Y4F9 1068 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 MROH5Q6ZUA9 1318 aa12.34□□□□□ -0.43
NPIPB3-209ENST00000538439 KLRG2A4D1S0 409 aaPredicted RBP12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 C6orf229H3BNL8 230 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 GRAPQ13588 217 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 CRY2Q49AN0 593 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 TNNI3KQ59H18 835 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 AACSQ86V21 672 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 PLEKHM2Q8IWE5 1019 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 GRAPLQ8TC17 118 aaPredicted RBP12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 GPATCH3Q96I76 525 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 FPGT-TNNI3KV9GXZ4 949 aa12.33□□□□□ -0.44
NPIPB3-209ENST00000538439 ST18O60284 1047 aa12.32□□□□□ -0.44
NPIPB3-209ENST00000538439 PDIA4P13667 645 aaKnown RBP12.32□□□□□ -0.44
NPIPB3-209ENST00000538439 CRAMP1Q96RY5 1269 aa12.32□□□□□ -0.44
NPIPB3-209ENST00000538439 NRXN2Q9P2S2 1712 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 TK2O00142 265 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 NPR1P16066 1061 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 MX1P20591 662 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 HOXA10P31260 410 aaPredicted RBP12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 PDE1AP54750 535 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 CTDSPL2Q05D32 466 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 GPR162Q16538 588 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 TSC1Q92574 1164 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 CELF1Q92879 486 aaKnown RBP12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 EAF2Q96CJ1 260 aaPredicted RBP12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 CALR3Q96L12 384 aaKnown RBP12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 NEUROD6Q96NK8 337 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 AOX1Q06278 1338 aa12.31□□□□□ -0.44
NPIPB3-209ENST00000538439 H0YIN7 160 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 ERC2O15083 957 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 BBOX1O75936 387 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 PDE8BO95263 885 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 ALDH1B1P30837 517 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 TMC4Q7Z404 712 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 C2CD5Q86YS7 1000 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 OTUD7AQ8TE49 926 aaPredicted RBP12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 MASTLQ96GX5 879 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 ZFRQ96KR1 1074 aaKnown RBP12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 ANKRD2Q9GZV1 360 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 CCDC8Q9H0W5 538 aaPredicted RBP12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 STAP2Q9UGK3 403 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 TTC41PQ6P2S7 1318 aa12.3□□□□□ -0.44
NPIPB3-209ENST00000538439 PCNTO95613 3336 aa12.29□□□□□ -0.44
NPIPB3-209ENST00000538439 A0A1B0GUL7 405 aa12.29□□□□□ -0.44
NPIPB3-209ENST00000538439 BHMG1C9JSJ3 638 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms